ID G7YIF8_CLOSI Unreviewed; 1257 AA.
AC G7YIF8;
DT 25-JAN-2012, integrated into UniProtKB/TrEMBL.
DT 25-JAN-2012, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE SubName: Full=RNA polymerase-associated protein CTR9 homolog {ECO:0000313|EMBL:GAA52741.1};
GN ORFNames=CLF_108707 {ECO:0000313|EMBL:GAA52741.1};
OS Clonorchis sinensis (Chinese liver fluke).
OC Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda;
OC Digenea; Opisthorchiida; Opisthorchiata; Opisthorchiidae; Clonorchis.
OX NCBI_TaxID=79923 {ECO:0000313|EMBL:GAA52741.1, ECO:0000313|Proteomes:UP000008909};
RN [1] {ECO:0000313|EMBL:GAA52741.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Henan {ECO:0000313|EMBL:GAA52741.1};
RX PubMed=22023798; DOI=10.1186/gb-2011-12-10-r107;
RA Wang X., Chen W., Huang Y., Sun J., Men J., Liu H., Luo F., Guo L., Lv X.,
RA Deng C., Zhou C., Fan Y., Li X., Huang L., Hu Y., Liang C., Hu X., Xu J.,
RA Yu X.;
RT "The draft genome of the carcinogenic human liver fluke Clonorchis
RT sinensis.";
RL Genome Biol. 12:R107-R107(2011).
RN [2]
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Henan;
RA Wang X., Huang Y., Chen W., Liu H., Guo L., Chen Y., Luo F., Zhou W.,
RA Sun J., Mao Q., Liang P., Zhou C., Tian Y., Men J., Lv X., Huang L.,
RA Zhou J., Hu Y., Li R., Zhang F., Lei H., Li X., Hu X., Liang C., Xu J.,
RA Wu Z., Yu X.;
RT "The genome and transcriptome sequence of Clonorchis sinensis provide
RT insights into the carcinogenic liver fluke.";
RL Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DF143344; GAA52741.1; -; Genomic_DNA.
DR AlphaFoldDB; G7YIF8; -.
DR Proteomes; UP000008909; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:0032991; C:protein-containing complex; IEA:UniProt.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR031101; Ctr9.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR001440; TPR_1.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR14027; RNA POLYMERASE-ASSOCIATED PROTEIN CTR9; 1.
DR PANTHER; PTHR14027:SF2; RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 HOMOLOG; 1.
DR Pfam; PF00515; TPR_1; 1.
DR Pfam; PF14559; TPR_19; 1.
DR Pfam; PF13181; TPR_8; 2.
DR SMART; SM00028; TPR; 12.
DR SUPFAM; SSF48452; TPR-like; 4.
DR PROSITE; PS50005; TPR; 4.
DR PROSITE; PS50293; TPR_REGION; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008909};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW ProRule:PRU00339}.
FT REPEAT 195..228
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 230..263
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 384..417
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 492..525
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 884..907
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 948..1257
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 948..992
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1003..1030
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1057..1084
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1102..1123
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1124..1157
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1171..1186
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1197..1233
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1257 AA; 144303 MW; 5C8D63C7B8EA1746 CRC64;
MRGEQADLVW NIDGVFAVVQ CTAQVEQSYG GLAAENSIEI PLRGGDEVIE LDTDQLPDGE
EVLNILNQEK APLPIWINVA VAYYKKRLYD DFEKVLEEAY RNAADLQPYQ EGDLVRLLDM
LANYYGRKAY KEKTKEKKNQ LIAHATRLFT SADRIDMYDQ KHLLGRAFFF IYEGENWSQA
DSQLNFVLNQ GAPSVPAYLG KACIAFNKKE YRNALGFYRK ALRLQPNCPA SVRLGMGHCF
FKLGNMEKAR LAFQRALDLD PDCVGALVGL AILDLNEKTQ AIILFRSCTH QESIKQGVQR
LSRAYNLDPT NPMVLNHLAD HFFYKKEYDK VQRLALHAFY NTETEAMRAE SCYQMARAFH
MQENYDNAFQ YYYLATQLAS SNFILPFYGL GQMYLHRNDL EHAAVSFERV LKDHPTNYET
LKILGSLYSQ SNKPDKRAQA KQLFKQVTES QPEDVEAWIE YAQLLENDTN GALDAYLKAL
TILENIQLDV APEILNNIAC LYHMKNDHTQ AMNFFTRALD RIQEEQQSEE NERADGGVGH
DDEYYHGLNI TVRYNRARLH EVCGRPDLAE EIYKSILLQH PSYIDCYLRL GCIARDRGMI
WDASIWFKDA LDIDPDHPDV WSLIGLLHLS KNEAEQAQKK FDRIIRQPTY RADAFARISL
GNIWLTTLHH PIRDKDKRKR HQDRALSFYK AVLCADPRNI WAAHGIGCVL AHKGFVNEAR
DVFAQVREAT ADFPDVWINI AHIYVEQKQY TAAIQMYENC LKKFSMQNNT ELLQYLARAY
FKAGQLKECK TMLLKAMHVK PWDQLLTFNL ALVRKRLAVT VLQDETSSFL SVCDAIADLN
MARCTFDHLS KSNEVLNQAL AADEARTCQD LLSQAKYHLD RAKSREEQER VVRKRQEDER
EAQRKRQIEL QKQAEQMRLE RERRLEEERG RFLEKAKQIV LEPVIEDRKG RKSAGGSRKR
DDFIASEDED SSGSPVERGD QHEGETGSQL KSKQKKHGTK RRSMDSRLAG GARKKQRLGS
SRDDGLTAKQ RMRVVSKAIV SESSDSSSDD DFNQEDEEAR VAALAKKILS SDEDDPDQPV
EHLMRHRQAS PSSSDLSDNH KHSRKAHKRS RNERVRSGRS RGQKRHNVSS EEEEEEDQVR
RTQAEDSSDE EAFRVRRPPS KSHHKHAKRD RNPRESSASS PEVKEKEVED YDEDSDDGLV
GLQKRKRMVA SSDSDEADND EKTKPRRANL QSDDDDNSNV APADDLSSAL SEDEESS
//
