ID H0YR44_TAEGU Unreviewed; 1562 AA.
AC H0YR44;
DT 22-FEB-2012, integrated into UniProtKB/TrEMBL.
DT 17-JUN-2020, sequence version 2.
DT 27-MAR-2024, entry version 57.
DE SubName: Full=Tetratricopeptide repeat domain 37 {ECO:0000313|Ensembl:ENSTGUP00000000752.2};
GN Name=SKIC3 {ECO:0000313|Ensembl:ENSTGUP00000000752.2};
OS Taeniopygia guttata (Zebra finch) (Poephila guttata).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae;
OC Estrildinae; Taeniopygia.
OX NCBI_TaxID=59729 {ECO:0000313|Ensembl:ENSTGUP00000000752.2, ECO:0000313|Proteomes:UP000007754};
RN [1] {ECO:0000313|Ensembl:ENSTGUP00000000752.2, ECO:0000313|Proteomes:UP000007754}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=20360741; DOI=10.1038/nature08819;
RA Warren W.C., Clayton D.F., Ellegren H., Arnold A.P., Hillier L.W.,
RA Kunstner A., Searle S., White S., Vilella A.J., Fairley S., Heger A.,
RA Kong L., Ponting C.P., Jarvis E.D., Mello C.V., Minx P., Lovell P.,
RA Velho T.A., Ferris M., Balakrishnan C.N., Sinha S., Blatti C., London S.E.,
RA Li Y., Lin Y.C., George J., Sweedler J., Southey B., Gunaratne P.,
RA Watson M., Nam K., Backstrom N., Smeds L., Nabholz B., Itoh Y., Whitney O.,
RA Pfenning A.R., Howard J., Volker M., Skinner B.M., Griffin D.K., Ye L.,
RA McLaren W.M., Flicek P., Quesada V., Velasco G., Lopez-Otin C.,
RA Puente X.S., Olender T., Lancet D., Smit A.F., Hubley R., Konkel M.K.,
RA Walker J.A., Batzer M.A., Gu W., Pollock D.D., Chen L., Cheng Z.,
RA Eichler E.E., Stapley J., Slate J., Ekblom R., Birkhead T., Burke T.,
RA Burt D., Scharff C., Adam I., Richard H., Sultan M., Soldatov A.,
RA Lehrach H., Edwards S.V., Yang S.P., Li X., Graves T., Fulton L.,
RA Nelson J., Chinwalla A., Hou S., Mardis E.R., Wilson R.K.;
RT "The genome of a songbird.";
RL Nature 464:757-762(2010).
RN [2] {ECO:0000313|Ensembl:ENSTGUP00000000752.2}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
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DR Ensembl; ENSTGUT00000000763.2; ENSTGUP00000000752.2; ENSTGUG00000000732.2.
DR GeneTree; ENSGT00390000016407; -.
DR HOGENOM; CLU_025369_0_0_1; -.
DR InParanoid; H0YR44; -.
DR OMA; CQWELDP; -.
DR OrthoDB; 3076611at2759; -.
DR TreeFam; TF323569; -.
DR Proteomes; UP000007754; Chromosome Z.
DR GO; GO:0005829; C:cytosol; IEA:Ensembl.
DR GO; GO:0000791; C:euchromatin; IEA:Ensembl.
DR GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
DR GO; GO:0055087; C:Ski complex; IEA:Ensembl.
DR GO; GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IEA:Ensembl.
DR GO; GO:0072344; P:rescue of stalled ribosome; IEA:Ensembl.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 8.
DR InterPro; IPR039226; Ski3/TTC37.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR15704; SUPERKILLER 3 PROTEIN-RELATED; 1.
DR PANTHER; PTHR15704:SF7; TETRATRICOPEPTIDE REPEAT PROTEIN 37; 1.
DR Pfam; PF13432; TPR_16; 3.
DR Pfam; PF13181; TPR_8; 3.
DR SMART; SM00028; TPR; 17.
DR SUPFAM; SSF81901; HCP-like; 1.
DR SUPFAM; SSF48452; TPR-like; 5.
DR PROSITE; PS50005; TPR; 5.
DR PROSITE; PS50293; TPR_REGION; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000007754};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW ProRule:PRU00339}.
FT REPEAT 40..73
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 562..595
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 596..629
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 859..892
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 1049..1082
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT COILED 3..39
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 1562 AA; 174379 MW; B2F29343294E1AF2 CRC64;
MSNKEVKAAL KNARDAIRNK QYKEALKHCK AVLKQEKNNY NAWVFIGLAA AELEQPDQAK
GAYKKAIELD PNQLLAWQGL ANLYEKSNQT DVKGDLADVY QKLLELYESG DKQKWCDVCN
KLVELYHQEK KYLEVAETWQ KLIRMKQEEG AEKAELHHLW KKMIQLLKDS TKNQDNKTGQ
LLLTAFEHAL HSADPVPGED HQNLYKDFIQ CLSKFPHEVA RLEKACHDMM ALYPTMSYPL
EVLCLHFVQS GTLSEKALHC FSRLLEMDAS SGPGIICFGI KCLKENKYKE AVKSLTEGLQ
KTNQCPAAWW YLAEAQMKIH EYRNAVLSCN QALEALGTPE SPNLPWKNLA LQLKAETLIK
IADADAAEEA IKALEQITDG SSDPVISALR GQAYLNKGLM NQASKISQEL LLSHPDVAEA
HALEGFIHYS QKNYEQAEKS FLNAIERKAG TAEYHQYLGL TYWFMSDDTK KDKGKALTQF
LKAAKLDSYL GSAFYYLGNY YRDIAGDKSR ARGCYKKAFE LDETDEESGT AAVSLSVELG
DMDTALSILN EVTEKARPGT AKWAWLHRGL YYLRTGRPSQ AVSDLQAALR ADPKDSNCWE
SLGEAYFNRG SYSTALKSFR KASELNPGLT YSIYRAAALE QILGKYKNAI ATYQQILKKT
EDYVPALKGL GECYLMLARS ALDNYLDRKA VDYIEQALAY FTRAVEHRPD VSCLWKLLGD
TCTSVHVISP TKVNVQVPGS LLSKNATKQV LKKNELLILG GRCYGRALKL ISLPSIWCDL
GINYYRQAEH FTAVGTDTTE ISELLEKSLQ CLKKAVRLDS KNHLYWNALG VVASCSAIGN
YALAQHSFIK SVQAEQINVV AWTNLGVLYL ATGNIEQAHE AFKVAQSLEP SYVLCWIGQA
LIAETVGSYD TMDLFRHTTE LSMHAEGAKG YAHWVCSTLQ DKDNRNTVLY LYNIVQLNAV
PAAQVVLSKY TERNPDDASA FTMFGFLNEY LHLKQQAAYA YERAASLLKN SEDTEKYNTA
MQNYGRSLCT LGRCDEAIEV YTSIPLTEFD GIVGLALAYF KKGLLEESIK AYEKALSVAE
SEEDKAHVLT ALAMIEYKLN KVDAAKTLLF KCSLKEPSTE SLKALCTLGL VKQDATLATA
ALKELLKHEK GNDGIYERCL IASAVYALQG RNVAVQREVS KAIHSYPDNS ALWSLLSRVV
PLYASKKSKG GALAGSVAHT LDVNCRKEVL LNIAVNQLVA GCHMLEDKKN NPLKNIQKAI
HVCPDNPAAW AVLMAACHAE NTVVCLNNTE PKRTGLEMTL VSTVSAKTGE SNLPHNYVRT
LEDWCLCQAI TSLEETGKLS EAEALCNKGL KNCPEHPALF LLLRQIQCKQ LLQSHKELPD
NILEELRKTV MSSSSSAAAW QWLAKIYQSQ RMMTGAEMCY RKSLQLASQQ GSWNGKLSSL
LRLAMLALEI CMANVPNEHW PSLVQEATTE ALKLSPCPLA ALLQALLQYN RKMGARETRR
MLERVVYQPA NPETIVSVAR WYLLQHLYAK DDCELIDVLI ENAKANGDVR ALELNEKLSA
SA
//
