ID H1Q3P4_9BACT Unreviewed; 883 AA.
AC H1Q3P4;
DT 21-MAR-2012, integrated into UniProtKB/TrEMBL.
DT 21-MAR-2012, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
GN ORFNames=HMPREF9140_01532 {ECO:0000313|EMBL:EHO68750.1};
OS Prevotella micans F0438.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Prevotella.
OX NCBI_TaxID=883158 {ECO:0000313|EMBL:EHO68750.1, ECO:0000313|Proteomes:UP000016023};
RN [1] {ECO:0000313|EMBL:EHO68750.1, ECO:0000313|Proteomes:UP000016023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=F0438 {ECO:0000313|EMBL:EHO68750.1,
RC ECO:0000313|Proteomes:UP000016023};
RG The Broad Institute Genome Sequencing Platform;
RA Earl A., Ward D., Feldgarden M., Gevers D., Izard J., Baranova O.V.,
RA Blanton J.M., Wade W.G., Dewhirst F.E., Young S.K., Zeng Q., Gargeya S.,
RA Fitzgerald M., Haas B., Abouelleil A., Alvarado L., Arachchi H.M.,
RA Berlin A., Chapman S.B., Gearin G., Goldberg J., Griggs A., Gujja S.,
RA Hansen M., Heiman D., Howarth C., Larimer J., Lui A., MacDonald P.J.P.,
RA McCowen C., Montmayeur A., Murphy C., Neiman D., Pearson M., Priest M.,
RA Roberts A., Saif S., Shea T., Sisk P., Stolte C., Sykes S., Wortman J.,
RA Nusbaum C., Birren B.;
RT "The Genome Sequence of Prevotella micans F0438.";
RL Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EHO68750.1}.
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DR EMBL; AGWK01000041; EHO68750.1; -; Genomic_DNA.
DR AlphaFoldDB; H1Q3P4; -.
DR STRING; 883158.HMPREF9140_01532; -.
DR PATRIC; fig|883158.3.peg.1530; -.
DR eggNOG; COG0086; Bacteria.
DR HOGENOM; CLU_000524_3_2_10; -.
DR Proteomes; UP000016023; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02655; RNAP_beta'_C; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 1.10.1790.20; -; 1.
DR Gene3D; 2.40.50.100; -; 3.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF54; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000016023};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 116..202
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF05000"
FT DOMAIN 204..716
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04998"
SQ SEQUENCE 883 AA; 97091 MW; 4CB574D06616E141 CRC64;
MVDDLIDGKI QKRLVETSVG RVIVNQIIPI EVGFFNGIIS KKSLRGLIAD VIKAVGMARA
CTFLDGIKNL GYHMSYVAGL SFNLGDIIVP EEKESIVGKG QEEVDQVRQN YEMGFITDKE
RYNQVIDAWT HVNNNLKQNV MKHMTEADQG FNAVYMMLDS GARGSADQIA QLAGMRGLMA
KPQKAGAEGT QIIENPIISN FKEGMSVLEY FISSHGARKG LADTAMKTAD AGYLTRRLVD
VSHDVIITEE DCGSLRGLEC RALKNGDEVI ATLYERILGR VSVHDVVNPT TSELIVAAGE
EITEEKARAI EQSPLEMVEI RSVLTCESKK GVCMKCYGRN LATARMVQLG EAVGVIAAQA
IGEPGTQLTL RTFHAGGVAG NAASNASIVS KNDARIEFDE LRTVPFVDED NKKCQMVVSR
LADIRFIDPK TGIVLLTDNV PYGSSLYFKN GDTVKKDDLI CKWDPFNAVI VSEYEGVIRL
HDVIEGTTYK AETDEATGLT ERIITEARDK NHVPTLDIVK SGAKKGADGQ YAAEDILGTY
NLPVGGHLEQ VVKDGTKVKT GTTLVKIPRS VGGAGDITGG LPRVTELFEA RNPSNPAVVS
EIDGEVTMGK VKRGNREIMI TSKTGEQRKY LVSLSKQILV QEHDAVRAGT PLSDGIITPA
DILSIKGPTA VQEYIVNEVQ DVYRLQGVKI NDKHFEIIVR QMMRKVRIDD PGDTTFLEQE
LVDKLDFAAE NDRIWGKKVV TDPGDSEYCY KGQILSVRKL RDENSSLKRR DLRTVQVRDA
VLATATQMLQ GITRAALGTK SFMSAASFQE TTKVLNEAAI RGKTDYLEGM KENVICGHLV
PAGTGLRQWQ KIIVGSQDEY MRMEINRRNI LDITEPQSRK AKR
//
