ID H1VXZ7_COLHI Unreviewed; 925 AA.
AC H1VXZ7;
DT 21-MAR-2012, integrated into UniProtKB/TrEMBL.
DT 21-MAR-2012, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=PRP1 splicing factor {ECO:0000313|EMBL:CCF45109.1};
GN ORFNames=CH063_03511 {ECO:0000313|EMBL:CCF45109.1}, CH63R_08967
GN {ECO:0000313|EMBL:OBR07446.1};
OS Colletotrichum higginsianum (strain IMI 349063) (Crucifer anthracnose
OS fungus).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes;
OC Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum;
OC Colletotrichum destructivum species complex.
OX NCBI_TaxID=759273 {ECO:0000313|EMBL:CCF45109.1, ECO:0000313|Proteomes:UP000007174};
RN [1] {ECO:0000313|EMBL:CCF45109.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=IMI 349063 {ECO:0000313|EMBL:CCF45109.1};
RA Ma L.-J., O'Connell R., van Themaat E.V.L., Stueber K., Young S.K.,
RA Zeng Q., Gargeya S., Fitzgerald M., Haas B., Abouelleil A., Alvarado L.,
RA Arachchi H.M., Berlin A., Chapman S.B., Gearin G., Goldberg J., Griggs A.,
RA Gujja S., Hansen M., Heiman D., Howarth C., Larimer J., Lui A.,
RA MacDonald P.J.P., McCowen C., Montmayeur A., Murphy C., Neiman D.,
RA Pearson M., Priest M., Roberts A., Saif S., Shea T., Sisk P., Stolte C.,
RA Sykes S., Wortman J., Nusbaum C., Birren B.;
RT "The genome sequence of Colletotrichum higginsianum IMI 34906.";
RL Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000007174}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IMI 349063 {ECO:0000313|Proteomes:UP000007174};
RX PubMed=22885923; DOI=10.1038/ng.2372;
RA O'Connell R.J., Thon M.R., Hacquard S., Amyotte S.G., Kleemann J.,
RA Torres M.F., Damm U., Buiate E.A., Epstein L., Alkan N., Altmueller J.,
RA Alvarado-Balderrama L., Bauser C.A., Becker C., Birren B.W., Chen Z.,
RA Choi J., Crouch J.A., Duvick J.P., Farman M.A., Gan P., Heiman D.,
RA Henrissat B., Howard R.J., Kabbage M., Koch C., Kracher B., Kubo Y.,
RA Law A.D., Lebrun M.-H., Lee Y.-H., Miyara I., Moore N., Neumann U.,
RA Nordstroem K., Panaccione D.G., Panstruga R., Place M., Proctor R.H.,
RA Prusky D., Rech G., Reinhardt R., Rollins J.A., Rounsley S., Schardl C.L.,
RA Schwartz D.C., Shenoy N., Shirasu K., Sikhakolli U.R., Stueber K.,
RA Sukno S.A., Sweigard J.A., Takano Y., Takahara H., Trail F.,
RA van der Does H.C., Voll L.M., Will I., Young S., Zeng Q., Zhang J.,
RA Zhou S., Dickman M.B., Schulze-Lefert P., Ver Loren van Themaat E.,
RA Ma L.-J., Vaillancourt L.J.;
RT "Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered
RT by genome and transcriptome analyses.";
RL Nat. Genet. 44:1060-1065(2012).
RN [3] {ECO:0000313|EMBL:OBR07446.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IMI 349063 {ECO:0000313|EMBL:OBR07446.1};
RA O'Connell R., Zambounis A., Thon M., Dallery J.-F.;
RT "Resequencing and annotation of the Colletotrichum higginsianum genome.";
RL Submitted (FEB-2016) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Proteomes:UP000092177}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IMI 349063 {ECO:0000313|Proteomes:UP000092177};
RX PubMed=28851275; DOI=10.1186/s12864-017-4083-x;
RA Dallery J.-F., Lapalu N., Zampounis A., Pigne S., Luyten I., Amselem J.,
RA Wittenberg A.H.J., Zhou S., de Queiroz M.V., Robin G.P., Auger A.,
RA Hainaut M., Henrissat B., Kim K.-T., Lee Y.-H., Lespinet O., Schwartz D.C.,
RA Thon M.R., O'Connell R.J.;
RT "Gapless genome assembly of Colletotrichum higginsianum reveals chromosome
RT structure and association of transposable elements with secondary
RT metabolite gene clusters.";
RL BMC Genomics 18:667-667(2017).
CC -!- SUBUNIT: Associated with the spliceosome.
CC {ECO:0000256|ARBA:ARBA00011524}.
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DR EMBL; CACQ02007445; CCF45109.1; -; Genomic_DNA.
DR EMBL; LTAN01000006; OBR07446.1; -; Genomic_DNA.
DR RefSeq; XP_018155964.1; XM_018303941.1.
DR STRING; 759273.H1VXZ7; -.
DR EnsemblFungi; CCF45109; CCF45109; CH063_03511.
DR GeneID; 28868048; -.
DR KEGG; chig:CH63R_08967; -.
DR VEuPathDB; FungiDB:CH63R_08967; -.
DR eggNOG; KOG0495; Eukaryota.
DR HOGENOM; CLU_007010_0_0_1; -.
DR OrthoDB; 655233at2759; -.
DR Proteomes; UP000007174; Unassembled WGS sequence.
DR Proteomes; UP000092177; Chromosome 6.
DR GO; GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IEA:EnsemblFungi.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:EnsemblFungi.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR010491; PRP1_N.
DR InterPro; IPR045075; Syf1-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR11246; PRE-MRNA SPLICING FACTOR; 1.
DR PANTHER; PTHR11246:SF1; PRE-MRNA-PROCESSING FACTOR 6; 1.
DR Pfam; PF06424; PRP1_N; 1.
DR Pfam; PF13432; TPR_16; 1.
DR Pfam; PF14559; TPR_19; 1.
DR SMART; SM00386; HAT; 12.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF48452; TPR-like; 3.
DR PROSITE; PS50005; TPR; 1.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00023187};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339}.
FT DOMAIN 12..166
FT /note="PRP1 splicing factor N-terminal"
FT /evidence="ECO:0000259|Pfam:PF06424"
FT REPEAT 694..727
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 1..90
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 109..134
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 62..81
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 925 AA; 103935 MW; 9FACF682A051F108 CRC64;
MSGRRDFLSQ PAPENYVAGL GRGATGFTTR SDLGPAREGP TEDQIKEAVA KRAAQLGLGT
DGKKADDNEN DDDDRFKDPD NEVGLFAGGV YDKDDEEADR IWKEVDEKMA RRRQKQREAR
EKAEQEEYER KNPKIQQQFA DLKRALSTVT DDEWANLPEV GDLTGKNRRS KQNLRQRFYA
VPDSVLAAAR DSSELGTTVA EDGASSSADA TDGTMTNFAK IGAARDKVLK SRLEQASQDG
TESVAGSAST IDPKGYITSL NKSVLNESQA QVGDINRVRE LLTSVIKTNP NNAPGWIAAA
RLEELAGKTV AARNVIARGC THCPKSEDVW LENIRLNEGK NAKIIAAEAI KKNDRSVRLW
VEAMRLENEP RAKKRVIRLA LDHIPESEAL WKEAVNLEED PEDARLLLAK ATELIPLSVD
LWLALARLES PENAQKVLNR ARKAVPTSHE IWIAAARLQE QLGEGTKVNV MKRAVAVLVK
ESAMPKREEW IGEAEKCEEE GAVITCGNII RETLGYGLDE DDDRKDTWME DARSSINRGM
YETARAIYSY ALRIFVNSRT LWMAAADLER NHGTKESLAQ VLEKAVEACP KSEVLWMMLA
KEKWQAGEVD NARLVLARAF KSNPDNEDIW LAAVKLEAEN GETERARKLL EEARDQAPTD
RVWMKSVVFE RVLGNSDAAL DLVQRALQYF PATAKLWMLK GQIYEDLDKV GQAREAYSTG
VKAVPKSVPL WLLYSRLEEK AGLVVKARSV LDRARLAVPK SPELWCESVR IERRAGNINQ
AKSLMAKALQ EVPKSGILWS EQIWHLEPRT QRKPRSLEAI KKVDNDPILF VAVARIFWGE
RKLEKAQNWF EKALVLDSDN GDTWAWYYKF LLQHGTDEKR ADVINKCVLN EPRHGEYWQA
IAKQPANARK GTEEILKMVA ERLEK
//
