ID H3H2P1_PHYRM Unreviewed; 540 AA.
AC H3H2P1;
DT 18-APR-2012, integrated into UniProtKB/TrEMBL.
DT 18-APR-2012, sequence version 1.
DT 24-JAN-2024, entry version 46.
DE RecName: Full=Rhamnogalacturonan endolyase {ECO:0008006|Google:ProtNLM};
OS Phytophthora ramorum (Sudden oak death agent).
OC Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC Phytophthora.
OX NCBI_TaxID=164328 {ECO:0000313|EnsemblProtists:Phyra84661, ECO:0000313|Proteomes:UP000005238};
RN [1] {ECO:0000313|Proteomes:UP000005238}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Pr102 {ECO:0000313|Proteomes:UP000005238};
RX PubMed=16946064; DOI=10.1126/science.1128796;
RA Tyler B.M., Tripathy S., Zhang X., Dehal P., Jiang R.H., Aerts A.,
RA Arredondo F.D., Baxter L., Bensasson D., Beynon J.L., Chapman J.,
RA Damasceno C.M., Dorrance A.E., Dou D., Dickerman A.W., Dubchak I.L.,
RA Garbelotto M., Gijzen M., Gordon S.G., Govers F., Grunwald N.J., Huang W.,
RA Ivors K.L., Jones R.W., Kamoun S., Krampis K., Lamour K.H., Lee M.K.,
RA McDonald W.H., Medina M., Meijer H.J., Nordberg E.K., Maclean D.J.,
RA Ospina-Giraldo M.D., Morris P.F., Phuntumart V., Putnam N.H., Rash S.,
RA Rose J.K., Sakihama Y., Salamov A.A., Savidor A., Scheuring C.F.,
RA Smith B.M., Sobral B.W., Terry A., Torto-Alalibo T.A., Win J., Xu Z.,
RA Zhang H., Grigoriev I.V., Rokhsar D.S., Boore J.L.;
RT "Phytophthora genome sequences uncover evolutionary origins and mechanisms
RT of pathogenesis.";
RL Science 313:1261-1266(2006).
RN [2] {ECO:0000313|EnsemblProtists:Phyra84661}
RP IDENTIFICATION.
RC STRAIN=Pr102 {ECO:0000313|EnsemblProtists:Phyra84661};
RG EnsemblProtists;
RL Submitted (JUN-2015) to UniProtKB.
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DR EMBL; DS566117; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; H3H2P1; -.
DR STRING; 164328.H3H2P1; -.
DR EnsemblProtists; Phyra84661; Phyra84661; Phyra84661.
DR VEuPathDB; FungiDB:PSURA_84661; -.
DR eggNOG; ENOG502QTKY; Eukaryota.
DR HOGENOM; CLU_037882_1_1_1; -.
DR InParanoid; H3H2P1; -.
DR OMA; VHCVYGD; -.
DR Proteomes; UP000005238; Unassembled WGS sequence.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0016837; F:carbon-oxygen lyase activity, acting on polysaccharides; IBA:GO_Central.
DR GO; GO:0045490; P:pectin catabolic process; IBA:GO_Central.
DR CDD; cd10317; RGL4_C; 1.
DR CDD; cd10320; RGL4_N; 1.
DR Gene3D; 2.70.98.10; -; 1.
DR Gene3D; 2.60.40.1120; Carboxypeptidase-like, regulatory domain; 1.
DR Gene3D; 2.60.120.260; Galactose-binding domain-like; 1.
DR InterPro; IPR011013; Gal_mutarotase_sf_dom.
DR InterPro; IPR008979; Galactose-bd-like_sf.
DR InterPro; IPR014718; GH-type_carb-bd.
DR InterPro; IPR029413; RG-lyase_II.
DR InterPro; IPR029411; RG-lyase_III.
DR InterPro; IPR016590; Rhamnogalacturonase_B.
DR InterPro; IPR015364; RhgB_N.
DR PANTHER; PTHR36574; RHAMNOGALACTURONATE LYASE-RELATED; 1.
DR PANTHER; PTHR36574:SF1; RHAMNOGALACTURONATE LYASE-RELATED; 1.
DR Pfam; PF14683; CBM-like; 1.
DR Pfam; PF14686; fn3_3; 1.
DR Pfam; PF09284; RhgB_N; 1.
DR SUPFAM; SSF74650; Galactose mutarotase-like; 1.
DR SUPFAM; SSF49785; Galactose-binding domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000005238};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..23
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 24..540
FT /note="Rhamnogalacturonan endolyase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5003588144"
FT DOMAIN 27..275
FT /note="Rhamnogalacturonase B N-terminal"
FT /evidence="ECO:0000259|Pfam:PF09284"
FT DOMAIN 282..357
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14686"
FT DOMAIN 371..539
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14683"
SQ SEQUENCE 540 AA; 58025 MW; 588DCE2DCE085CCC CRC64;
MLAGRLVSAI LLLASGFMPA AQAATSFGYT SSGGLWVISS GGGLTVTMDQ DTCDITSMLW
NDVELQYSAK NTHVNSGLGS VTSSIKTLDD STIRIICKTT GLEQTYLFRP NENAIYMGTY
HTTDLELAEL RFLARLDRTA LNNGMSAASE IDGMSAIEST DIYADDDGVT ASKFYSGIAH
IEDKVHGVTG DAGGVFFVMS DYAYEASLGG PFFRDINNQC TTANELTVYF NSDHTRTEDY
RYGFHGPYAL VFTDGTEPST SDVDFGFFQD LGLTGFITEA KRGTLSGTIT DDNAVLGSDI
VVGFSNDQVQ YWVSVDSNAT TFTSPLMRGG RYNTTIYKKQ LAVSSDSVLI TAGSTKTQTL
DVTYELESSP IWRIGEWDGT PDGFLNAANI HTMHPSDSRL DTWVDSVTFA PGTDDDSTFP
MAVFRAVNDP ITLSFTLTSG QAADARTLKI GLTLAQSSGR CSVTVNSDWT ADVPASVAVT
TRGVTRGVTL GNYKLYEYTI PTSALLTGTN EIKLSIASGS TDPSEKWLSA SVVFDALELV
//
