ID I0YRV4_COCSC Unreviewed; 904 AA.
AC I0YRV4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 49.
DE SubName: Full=Transducin family protein {ECO:0000313|EMBL:EIE21123.1};
GN ORFNames=COCSUDRAFT_43469 {ECO:0000313|EMBL:EIE21123.1};
OS Coccomyxa subellipsoidea (strain C-169) (Green microalga).
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC Trebouxiophyceae incertae sedis; Elliptochloris clade; Coccomyxa;
OC Coccomyxa subellipsoidea.
OX NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE21123.1, ECO:0000313|Proteomes:UP000007264};
RN [1] {ECO:0000313|EMBL:EIE21123.1, ECO:0000313|Proteomes:UP000007264}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C-169 {ECO:0000313|EMBL:EIE21123.1,
RC ECO:0000313|Proteomes:UP000007264};
RX PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39;
RA Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.,
RA Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Proschold T.,
RA Salamov A., Schmutz J., Weeks D., Yamada T., Claverie J.M., Grigoriev I.,
RA Van Etten J., Lomsadze A., Borodovsky M.;
RT "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea
RT reveals traits of cold adaptation.";
RL Genome Biol. 13:R39-R39(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
CC -!- SIMILARITY: Belongs to the WD repeat WDR3/UTP12 family.
CC {ECO:0000256|ARBA:ARBA00038229}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIE21123.1}.
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DR EMBL; AGSI01000013; EIE21123.1; -; Genomic_DNA.
DR RefSeq; XP_005645667.1; XM_005645610.1.
DR AlphaFoldDB; I0YRV4; -.
DR STRING; 574566.I0YRV4; -.
DR GeneID; 17039105; -.
DR KEGG; csl:COCSUDRAFT_43469; -.
DR eggNOG; KOG0306; Eukaryota.
DR OrthoDB; 168440at2759; -.
DR Proteomes; UP000007264; Unassembled WGS sequence.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0042254; P:ribosome biogenesis; IEA:UniProt.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 4.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR011047; Quinoprotein_ADH-like_supfam.
DR InterPro; IPR007148; SSU_processome_Utp12.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19853; WD REPEAT CONTAINING PROTEIN 3 WDR3; 1.
DR PANTHER; PTHR19853:SF0; WD REPEAT-CONTAINING PROTEIN 3; 1.
DR Pfam; PF04003; Utp12; 1.
DR Pfam; PF00400; WD40; 9.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 12.
DR SUPFAM; SSF50998; Quinoprotein alcohol dehydrogenase-like; 1.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 3.
DR PROSITE; PS50082; WD_REPEATS_2; 8.
DR PROSITE; PS50294; WD_REPEATS_REGION; 6.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000007264};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT REPEAT 68..102
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 103..136
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 145..186
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 388..428
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 469..501
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 571..612
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 613..654
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 655..687
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT DOMAIN 791..892
FT /note="Small-subunit processome Utp12"
FT /evidence="ECO:0000259|Pfam:PF04003"
FT REGION 224..247
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 289..316
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 904 AA; 96891 MW; 2AF9ADCCA0098883 CRC64;
MVKAYLRYEL SNTFGVVTSN SALVHDNSGK SVVTAALENV AVWNIRQGTL VRMLVPPTSA
EGRAPAEVTQ LAAAPASPHV AAGHSDGTIR IWNLETGDCE VTWTGHRRAV TALRYNRSGG
MLASGSQDTD IILWDVVGET GLFRLRAHTA EVTDLAFVER CNVLVSGSKD GYVRAWDLGT
QHCFQTVLGQ QGEVWSLDVD PFEHQLAVGG VSAQVHLFRL GGDASNAGEA GPSGREARTK
EVLHAEGSVA RQAPERVALL RYSPTGHVLG CQSAGKVLEL FRLRSEKEAR KHMQRRKKRK
RDKASGGDAE QTGTAVQEAD AAGDAIMASD LLAPLQVLRA KAKIKAFAYG KQNAKGVVAT
VTLALSNNLI ESWSVTEEEC KRLRAVDAPG HRSGVRALAL SSDDAVLLSA AAGAVKLWNP
TSGACLRSIE TGQGLCALFA PGNRHAVVGT KEGSIQILDI GASEVCDTIA AHTAAVWSVV
ALPDSSGFVS CSADHDVKFW EWEVTTEAPA AGAAAGPAAR RLGARHVRTL KMADDVLCAR
ISPDGRLLAV SLLDSTIQVF FMDTLKFFLS LYGHKLPVLS MDISSDSTLL ISGSADKNIK
IWGLDFGDCH RSIFAHSDSI MQVAFVPDTH YAFTVGKDGL VKYWDADRWE LLLTLEGHKA
EVWCLAVSRA GDMCVSAGAD RSLRVWQRTE EPFFVEEEKE KRLESLFEAD LEENAASKQT
GLEEAPAETG TALAGRQTLE VLSGAESIAD ALELAAAEAE RHRAFAAEAA AAGAPGKAPP
ANPLLAGRSV EEYVLAAVGR VRAGDLEQAL LVLPFSDALR LLHYLCSWLA RGSRVELVSR
AAALLVRLHH AQLLATPSAR APLVRLRGLL RQRTQGLKDT LGFNLAAMAH LQRALKDRQQ
SAMA
//
