ID I0YV87_COCSC Unreviewed; 1770 AA.
AC I0YV87;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIE22306.1};
GN ORFNames=COCSUDRAFT_66556 {ECO:0000313|EMBL:EIE22306.1};
OS Coccomyxa subellipsoidea (strain C-169) (Green microalga).
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Trebouxiophyceae;
OC Trebouxiophyceae incertae sedis; Elliptochloris clade; Coccomyxa;
OC Coccomyxa subellipsoidea.
OX NCBI_TaxID=574566 {ECO:0000313|EMBL:EIE22306.1, ECO:0000313|Proteomes:UP000007264};
RN [1] {ECO:0000313|EMBL:EIE22306.1, ECO:0000313|Proteomes:UP000007264}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C-169 {ECO:0000313|EMBL:EIE22306.1,
RC ECO:0000313|Proteomes:UP000007264};
RX PubMed=22630137; DOI=10.1186/gb-2012-13-5-r39;
RA Blanc G., Agarkova I., Grimwood J., Kuo A., Brueggeman A., Dunigan D.,
RA Gurnon J., Ladunga I., Lindquist E., Lucas S., Pangilinan J., Proschold T.,
RA Salamov A., Schmutz J., Weeks D., Yamada T., Claverie J.M., Grigoriev I.,
RA Van Etten J., Lomsadze A., Borodovsky M.;
RT "The genome of the polar eukaryotic microalga coccomyxa subellipsoidea
RT reveals traits of cold adaptation.";
RL Genome Biol. 13:R39-R39(2012).
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EIE22306.1}.
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DR EMBL; AGSI01000010; EIE22306.1; -; Genomic_DNA.
DR RefSeq; XP_005646850.1; XM_005646793.1.
DR STRING; 574566.I0YV87; -.
DR GeneID; 17040292; -.
DR KEGG; csl:COCSUDRAFT_66556; -.
DR eggNOG; KOG1001; Eukaryota.
DR eggNOG; KOG1002; Eukaryota.
DR OrthoDB; 318534at2759; -.
DR Proteomes; UP000007264; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45865:SF1; E3 UBIQUITIN-PROTEIN LIGASE SHPRH; 1.
DR PANTHER; PTHR45865; E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF13923; zf-C3HC4_2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000007264};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 1518..1556
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 1589..1745
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 100..270
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 296..317
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 587..621
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1147..1204
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1232..1310
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1491..1510
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 489..516
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 249..270
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1177..1192
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1770 AA; 191274 MW; 042089AA8A0ABD8C CRC64;
MSEAGVDGLL AILGDSGLTR GAAERLLQQA EGSVETAVAL YFSSDHAAIV QEESESPLNT
LRGILGPAVT SHQAEQLLAR AHNSVHQAVE LYYNTAGGAA PGSGASSEAE DAGVGPSSGA
ESLVSSREGS PAEPEMAEGA GQAGPSSDPS PGSAGPSGAE PVRRPRTATR RQPRSGAPRG
LDAITGVPGP SNPRRDRAWE PPRARDLTFL AAAAGADPAP ANGSGRRRRP SRRSAGRLPP
RFADAANGGE PGDDDDDSDE DEDDDDDVMV LDESEGMPSL DSQLALKCHD PSVLAVTEDE
PEAEAGAEAH EDDDEESVPF HIARRQRREM RELGTRPQIG VLLRLKEQAL QEGRQGQSRR
GLPFAKHRDA SGRIFAAEAE KVPPMMPPSK ALGFPLHLGG LDVDLQLQNA ETDGQIAVDV
LEGRRKLLDD KFTFEKHGQN GWLLQQAVTD EAEEEQLSCV TDSQDYRLFS VLDNLESADD
IEVQYELRVE SKSGEIKKAK KKKSKAKDAQ VKLRAQVYLK EKAISKDVLQ ATEQKNKNNK
NKHMRLYALI LQLLERGSGL SLGPDSDGLL NFCDPVESQT PEQRLLEAGE QKAEDKGKQR
AEEPLDEQSS EVEEVPKPKW QTDIEKLLTS GRLPKDAPLE SVPAQLQSHP KRFQLQGLRW
MVARERNGDA VGRGHLHLHP AWLQLLTADG QLIYVHLMPP HQVTADFITS PTGGTCGGFL
CDMMGLGKTL ETLMLVLAHP APSDWAVAEL DGRSRASDAD PVPIKTTLIV MPANLLTQWQ
EELQLHVNPG ALTWGVYQGQ EASLSMHMRR QESHNSIADT RISGRPRTKM NPASNTWTLM
VTELFCAGPE GQPLPLHQCD VAFMSYENLR KELGYADKSL LLQYGFWRLV LDEAQLVASS
SSVAALMTSA LWRRHAWVVT GTPITSRVEE IQGLLEFLAY EPFYDNKSWS SLVLRRYETG
SERLLPLCSL LKGVMLRRTK EDVEGELELL PCTHEDVWVA LSSVERAMYE RTRQAVDQGL
RHSAARRRAR AFSSAYKKVT AKVVGQFTQL RQQCCHPQIV RRDVWLGKTR LSMRQILTRL
VTRAFGEYDA ALRAEYNARL LLAAVQLDDE LCRPDSNGDA FELVLRQIEL GMDLSATTDL
QQLLGSRDQE GGLPAPDLSA PHPFRGSGPG TGPGEDQGDR GLKRKADEAV GPSEGRAEAA
NKRSGTLAAV TACAAGRIEA QRQGASAVGG AGAATASASG SPTAVQPGSD HGAPVEEAAP
SSLRNGSSNA QAAATAPGPE DKGKGKAVEE LEAAAEGAEA QQPALDSEAA QAAKAARDRV
RAWQRLRLEG LALLADVLET SEEALGRKRS KKPEDAADAD ARLVAIRDDL QQVRLAAESL
RLVLGDEEVE ATALAAVMRF SRRQRKMEVD EDLEAGRELE MQEERAAQQR STQQMLRTYS
HLRARAHPIK AAEKGVASAA DATTERWHAL QHLAHKLASL DASKEHPAIL DADAAGPSSG
AGPSTGPAEA EADEIGSCPI CLDVCERRTV TSCGHHFCSD CIHESVHNRA ECPICRAPLR
PEDLYDAATE EEEETARLHH EHVGQYGAKV TALLTQLAEM RSADPTAKAV VFSAWGRLLK
LVGDALASNG LQYVSLAGAQ PPARAEALRR FIHDPDCAVI LIVLSTGGGA AGLTLTVANT
VFLMEPALNP GLEAQAAARI YRLGQTKATR VVRLLAEDTI ESSILKYQQR KLNAGGGVSE
EESLLPAHDV DASTLATLMR EHPPPPAPVK
//
