ID I1JR26_SOYBN Unreviewed; 1028 AA.
AC I1JR26;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 73.
DE RecName: Full=Protein transport protein Sec24-like {ECO:0008006|Google:ProtNLM};
GN Name=100810009 {ECO:0000313|EnsemblPlants:KRH68407};
GN ORFNames=GLYMA_03G229000 {ECO:0000313|EMBL:KRH68407.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH68407.1};
RN [1] {ECO:0000313|EMBL:KRH68407.1, ECO:0000313|EnsemblPlants:KRH68407}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH68407};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH68407.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH68407}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH68407};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH68407.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH68407.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the SEC23/SEC24 family. SEC24 subfamily.
CC {ECO:0000256|ARBA:ARBA00008334}.
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DR EMBL; CM000836; KRH68407.1; -; Genomic_DNA.
DR RefSeq; XP_003520784.1; XM_003520736.3.
DR RefSeq; XP_006577203.1; XM_006577140.2.
DR AlphaFoldDB; I1JR26; -.
DR SMR; I1JR26; -.
DR STRING; 3847.I1JR26; -.
DR PaxDb; 3847-GLYMA03G38830-1; -.
DR EnsemblPlants; KRH68407; KRH68407; GLYMA_03G229000.
DR GeneID; 100810009; -.
DR Gramene; KRH68407; KRH68407; GLYMA_03G229000.
DR KEGG; gmx:100810009; -.
DR eggNOG; KOG1985; Eukaryota.
DR InParanoid; I1JR26; -.
DR OMA; CILCKHI; -.
DR OrthoDB; 977017at2759; -.
DR Proteomes; UP000008827; Chromosome 3.
DR GO; GO:0030127; C:COPII vesicle coat; IBA:GO_Central.
DR GO; GO:0070971; C:endoplasmic reticulum exit site; IBA:GO_Central.
DR GO; GO:0005794; C:Golgi apparatus; IEA:UniProtKB-KW.
DR GO; GO:0000149; F:SNARE binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IBA:GO_Central.
DR GO; GO:0090110; P:COPII-coated vesicle cargo loading; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR CDD; cd01479; Sec24-like; 1.
DR Gene3D; 2.60.40.1670; beta-sandwich domain of Sec23/24; 1.
DR Gene3D; 1.20.120.730; Sec23/Sec24 helical domain; 1.
DR Gene3D; 3.40.20.10; Severin; 1.
DR Gene3D; 3.40.50.410; von Willebrand factor, type A domain; 1.
DR Gene3D; 2.30.30.380; Zn-finger domain of Sec23/24; 1.
DR InterPro; IPR029006; ADF-H/Gelsolin-like_dom_sf.
DR InterPro; IPR007123; Gelsolin-like_dom.
DR InterPro; IPR036180; Gelsolin-like_dom_sf.
DR InterPro; IPR006900; Sec23/24_helical_dom.
DR InterPro; IPR036175; Sec23/24_helical_dom_sf.
DR InterPro; IPR006896; Sec23/24_trunk_dom.
DR InterPro; IPR012990; Sec23_24_beta_S.
DR InterPro; IPR041742; Sec24-like_trunk_dom.
DR InterPro; IPR036465; vWFA_dom_sf.
DR InterPro; IPR006895; Znf_Sec23_Sec24.
DR InterPro; IPR036174; Znf_Sec23_Sec24_sf.
DR PANTHER; PTHR13803; SEC24-RELATED PROTEIN; 1.
DR PANTHER; PTHR13803:SF39; SECRETORY 24AB, ISOFORM A; 1.
DR Pfam; PF00626; Gelsolin; 1.
DR Pfam; PF08033; Sec23_BS; 1.
DR Pfam; PF04815; Sec23_helical; 1.
DR Pfam; PF04811; Sec23_trunk; 1.
DR Pfam; PF04810; zf-Sec23_Sec24; 1.
DR SUPFAM; SSF81995; beta-sandwich domain of Sec23/24; 1.
DR SUPFAM; SSF82754; C-terminal, gelsolin-like domain of Sec23/24; 1.
DR SUPFAM; SSF81811; Helical domain of Sec23/24; 1.
DR SUPFAM; SSF53300; vWA-like; 1.
DR SUPFAM; SSF82919; Zn-finger domain of Sec23/24; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Golgi apparatus {ECO:0000256|ARBA:ARBA00023034};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT DOMAIN 359..396
FT /note="Zinc finger Sec23/Sec24-type"
FT /evidence="ECO:0000259|Pfam:PF04810"
FT DOMAIN 433..669
FT /note="Sec23/Sec24 trunk"
FT /evidence="ECO:0000259|Pfam:PF04811"
FT DOMAIN 675..759
FT /note="Sec23/Sec24 beta-sandwich"
FT /evidence="ECO:0000259|Pfam:PF08033"
FT DOMAIN 770..873
FT /note="Sec23/Sec24 helical"
FT /evidence="ECO:0000259|Pfam:PF04815"
FT DOMAIN 903..963
FT /note="Gelsolin-like"
FT /evidence="ECO:0000259|Pfam:PF00626"
FT REGION 1..252
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..38
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 71..184
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 228..246
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1028 AA; 113000 MW; 4ED394DBFAA32A74 CRC64;
MGTENPGRPT FPPSRPASSP FAAAQTVSPF SSTGPVAGSE PPSFRPSPSA PPPQGAMRFS
SAGPAAVRPG APSFRPAPPG RFNDPSVPPP VGPSNAPPAA GPFQQFPPPP FPPTMQPRGP
PQPMLPPSIQ SPPSQALPFP TSLPAQPQMP SVPMGSPPPP PQSAAPAHLG SNFPPPPPTI
QPSFPGYPSK HASPEMQAPP MHSSFPANQG NFGPVPPAAS SPFLSHPGGY VPSPPMAPPL
GIQPMQQPGS VPPMGAIQGL AEDFNALTLQ TRPGTMDPLF DAKELPRPLE GDVEPKNLVD
MYPMNCSPRY LRLTTSAVPS SQSLASRWHL PLGAVVCPLA EPPDGEEVPI VNFAPASVVR
CRRCRTYVNP YMTFTEAGRK FRCNICTLLN DVPSEYYAQL DATGKRVDIN QRPELTKGTV
EFVAPAEYMV RPPMPPVYFF LIDVSISAVR SGMIEVVANT IKSCLDELPG FPRTQIGFAT
FDSTIHFYNM KSSLTQPQML VVSDLDDIFI PLPDDLLVNL SESRNVVETF LDSLPTMFQD
NVNLESAFGP ALKAAFMVMS QLGGKLLIFQ NTLPSLGVGR LKLRGDDSRV YGTDKEYGLR
LPDDPFYKQM AAEFSKYQIS TNVYAFSDKY TDIASLGTLA KYTAGQVYYY PAFQSAIHGE
KLRHELRRDL TRETAWEAVM RIRCAKGVRF TTYHGNFMLR STDLLALPAV DCDKAFAMQL
SLEETLLTTQ TMYLQVALLY TASCGERRIR VHTMAVPVVT ELADIYRLAD TGAIVSLLSR
LAIEKTLSQK LEDARSAVQL RVVKALREYR NLYSVQHRLA NRMIYPESLK FLMLYGLALC
RSTALRGGYG DVPLDERCAA GHIMMTVSIK RLLKLLYPSL IRLDEYLLKA SVQADEVQSV
ERRLPLTGES LDSRGLYIYD DGFRFIIWFG RVISPDIAKN LLGADFAAEL SKTTLSEHDN
EMSRRLVKVL EKLRYTDRAY YQLCHLVRQG EQPKEGFLLL SNLVEDQMGG NSGYAEWMLQ
ISRQVQQS
//
