ID I1LHR1_SOYBN Unreviewed; 482 AA.
AC I1LHR1;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN Name=100814484 {ECO:0000313|EnsemblPlants:KRH28659};
GN ORFNames=GLYMA_11G067300 {ECO:0000313|EMBL:KRH28659.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH28659.1};
RN [1] {ECO:0000313|EMBL:KRH28659.1, ECO:0000313|EnsemblPlants:KRH28659}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH28659};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH28659.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH28659}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH28659};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH28659.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH28659.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000844; KRH28659.1; -; Genomic_DNA.
DR RefSeq; XP_003537575.1; XM_003537527.3.
DR AlphaFoldDB; I1LHR1; -.
DR SMR; I1LHR1; -.
DR STRING; 3847.I1LHR1; -.
DR PaxDb; 3847-GLYMA11G07200-1; -.
DR EnsemblPlants; KRH28659; KRH28659; GLYMA_11G067300.
DR GeneID; 100814484; -.
DR Gramene; KRH28659; KRH28659; GLYMA_11G067300.
DR KEGG; gmx:100814484; -.
DR eggNOG; KOG0113; Eukaryota.
DR HOGENOM; CLU_045151_2_1_1; -.
DR InParanoid; I1LHR1; -.
DR OMA; GRTTKGW; -.
DR OrthoDB; 180547at2759; -.
DR Proteomes; UP000008827; Chromosome 11.
DR ExpressionAtlas; I1LHR1; baseline and differential.
DR GO; GO:0005685; C:U1 snRNP; IBA:GO_Central.
DR GO; GO:0071004; C:U2-type prespliceosome; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0030619; F:U1 snRNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR CDD; cd12236; RRM_snRNP70; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR034143; snRNP70_RRM.
DR InterPro; IPR022023; U1snRNP70_N.
DR PANTHER; PTHR13952; U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD; 1.
DR PANTHER; PTHR13952:SF5; U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF12220; U1snRNP70_N; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 141..219
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 223..482
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 244..482
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 482 AA; 57627 MW; 3918C94DE0145216 CRC64;
MGDNNSNNDA FMRNQNAAVQ ARTKAQNRSN VLQLKLIGQS HPTGLTANLL KLFEPRPPLE
YKPPPEKRKC PPLSGMAQFV SKFAEPGEPE YAPPVPETET PAQKRARIHK LRLEKGAAKA
AEELEKYDPH NDPNVSGDPY KTLFVAKLSY ETTESRIKRE FESYGPIKRV RLVADKDINK
PRGYAFIEYL HTRDMKAAYK QADGRKIDGR RVLVDVERGR TVPNWRPRRL GGGLGTTRVG
GEEVNQRHSG REQQQSRSEE PRVREDRHAD RDREISRERG RDKDRERERS REHSHERVRD
RDHREDRHHR DRDRNRDRDR DRERDRDRGR DRDRTRDRDR ERGRDRDRDR EYDRHRERDR
DYEVGDPDRG RSRDRESDYD RVESKHGERN HDYEPEDDRG RHNQYEHGRR HADPDHDPER
YDHYNHGDDH GDHYNQYRDH DGMEDDYHAG RATSESHEKE RSHDVDREYQ RSERSHSREY
DY
//
