ID I1LNZ5_SOYBN Unreviewed; 698 AA.
AC I1LNZ5;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 70.
DE RecName: Full=C3H1-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100797806 {ECO:0000313|EnsemblPlants:KRH23919};
GN ORFNames=GLYMA_12G010800 {ECO:0000313|EMBL:KRH23919.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH23919};
RN [1] {ECO:0000313|EMBL:KRH23919.1, ECO:0000313|EnsemblPlants:KRH23919}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH23919};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH23919.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH23919}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH23919};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH23919.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH23919.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000845; KRH23919.1; -; Genomic_DNA.
DR RefSeq; XP_014619884.1; XM_014764398.1.
DR AlphaFoldDB; I1LNZ5; -.
DR PaxDb; 3847-GLYMA12G01340-3; -.
DR EnsemblPlants; KRH23919; KRH23919; GLYMA_12G010800.
DR GeneID; 100797806; -.
DR Gramene; KRH23919; KRH23919; GLYMA_12G010800.
DR eggNOG; ENOG502QWIK; Eukaryota.
DR HOGENOM; CLU_028778_0_0_1; -.
DR InParanoid; I1LNZ5; -.
DR OMA; CHEDNII; -.
DR OrthoDB; 1354311at2759; -.
DR Proteomes; UP000008827; Chromosome 12.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR PANTHER; PTHR24009:SF3; RNA-BINDING (RRM_RBD_RNP MOTIFS) FAMILY PROTEIN-RELATED; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 222..249
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 353..429
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT ZN_FING 222..249
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 61..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 545..572
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 581..600
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 608..634
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 79..97
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 698 AA; 75798 MW; EDC7814B28E6565A CRC64;
MDSYEATRIV FSRIQNLDAE NASKIMGLLL LQDHGEKEMI RLAFGPEALV HSVILKARKD
LGLPSNSPPT PSTPPSPSPF ISRQNSNTSS RLSVSGINLP PPLTIPNPSA SWPTMSELQT
DLVAGSSTSL SSLPFYANGG SDPIDEFQLQ DQLSFLNDGS NTSISHKNNP DLFYPTYSDF
SSSPTTAADP TLFPSYGWGG SLHRRSCSVN DACLGTEDPN SGLGWKPCLY FARGYCKNGT
SCRFLHGGLG DADAAMVGSP SKIEMMEQCH ELLRSKSAQQ QRLAAASQLM SSSTFPYSPK
CMNFLLQQQQ NDTQRAAAAA LMMSEDLHKF GRSRLERNDF SLNSPGMVNP ASRQIYLTFP
ADSTFREEDV SNYFSIYGPV QDVRIPYQQK RMFGFVTFVY PETVKLILSK GNPHFVCDAR
VLVKPYKEKG KVPDKKLQQQ QVDRGDFSPC GTPTGLDARD HQFDLQLGGR MFYNTQDMLW
RRKLEEQADL QQALELQSRR LMGLQLLDIK KHHQRALCTG SPIPSPTHSP NMFNQNLVPS
FHITSEAPKE SGSTSAPAGT ASVSTGQQSV NISVGKEVMV NGEDGYDEGN GRQSSSHDDC
DLQECLEHNL PDSPFASPTK ATGPGGFMAP FSNGPNEAID ADASAASANS KFGTGTLLPA
ASALDMGTFK SFNCQIPRFS SGHGTIGMFA GTGGPIGI
//
