ID I1LQH6_SOYBN Unreviewed; 705 AA.
AC I1LQH6;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 2.
DT 27-MAR-2024, entry version 64.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100804896 {ECO:0000313|EnsemblPlants:KRH24682};
GN ORFNames=GLYMA_12G055700 {ECO:0000313|EMBL:KRH24682.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH24682};
RN [1] {ECO:0000313|EMBL:KRH24682.1, ECO:0000313|EnsemblPlants:KRH24682}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH24682};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH24682.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH24682}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH24682};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH24682.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH24682.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000845; KRH24682.1; -; Genomic_DNA.
DR RefSeq; XP_003540710.1; XM_003540662.3.
DR AlphaFoldDB; I1LQH6; -.
DR SMR; I1LQH6; -.
DR PaxDb; 3847-GLYMA12G05960-1; -.
DR EnsemblPlants; KRH24682; KRH24682; GLYMA_12G055700.
DR GeneID; 100804896; -.
DR Gramene; KRH24682; KRH24682; GLYMA_12G055700.
DR KEGG; gmx:100804896; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_0_1; -.
DR InParanoid; I1LQH6; -.
DR OMA; RVHVFMV; -.
DR OrthoDB; 443575at2759; -.
DR Proteomes; UP000008827; Chromosome 12.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 8.
DR PANTHER; PTHR47924:SF293; DYW DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47924; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 4.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 9.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 53..83
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 84..114
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 115..149
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 216..250
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 287..321
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 349..383
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 425..455
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 456..490
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 593..627
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 705 AA; 79499 MW; 1E95A8B4326A7DC8 CRC64;
MGRHGFVQKL VGELCFLDSS PFAKLLDSCV RSKSGIDARR IHARIIKTQF SSEIFIQNRL
VDAYGKCGYF EDARKVFDRM PQRNTFSYNA VLSVLTKFGK LDEAFNVFKS MPEPDQCSWN
AMVSGFAQHD RFEEALRFFV DMHSEDFVLN EYSFGSALSA CAGLTDLNMG IQIHALISKS
RYLLDVYMGS ALVDMYSKCG VVACAQRAFD GMAVRNIVSW NSLITCYEQN GPAGKALEVF
VMMMDNGVEP DEITLASVVS ACASWSAIRE GLQIHARVVK RDKYRNDLVL GNALVDMYAK
CRRVNEARLV FDRMPLRNVV SETSMVCGYA RAASVKAARL MFSNMMEKNV VSWNALIAGY
TQNGENEEAV RLFLLLKRES IWPTHYTFGN LLNACANLAD LKLGRQAHTQ ILKHGFWFQS
GEESDIFVGN SLIDMYMKCG MVEDGCLVFE RMVERDVVSW NAMIVGYAQN GYGTNALEIF
RKMLVSGQKP DHVTMIGVLS ACSHAGLVEE GRRYFHSMRT ELGLAPMKDH FTCMVDLLGR
AGCLDEANDL IQTMPMQPDN VVWGSLLAAC KVHGNIELGK YVAEKLMEID PLNSGPYVLL
SNMYAELGRW KDVVRVRKQM RQRGVIKQPG CSWIEIQSRV HVFMVKDKRH PLKKDIHLVL
KFLTEQMKWA GYVPEADDDE ICEEESDSEL VLHFEMETEA DTAVA
//
