ID I1LRH3_SOYBN Unreviewed; 747 AA.
AC I1LRH3;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 59.
DE RecName: Full=Sec23/Sec24 trunk domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100807557 {ECO:0000313|EnsemblPlants:KRH25248};
GN ORFNames=GLYMA_12G089700 {ECO:0000313|EMBL:KRH25248.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH25248};
RN [1] {ECO:0000313|EMBL:KRH25248.1, ECO:0000313|EnsemblPlants:KRH25248}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH25248};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH25248.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH25248}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH25248};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH25248.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH25248.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the SEC23/SEC24 family. SEC24 subfamily.
CC {ECO:0000256|ARBA:ARBA00008334}.
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DR EMBL; CM000845; KRH25248.1; -; Genomic_DNA.
DR RefSeq; XP_003539835.1; XM_003539787.3.
DR AlphaFoldDB; I1LRH3; -.
DR SMR; I1LRH3; -.
DR STRING; 3847.I1LRH3; -.
DR PaxDb; 3847-GLYMA12G09540-1; -.
DR EnsemblPlants; KRH25248; KRH25248; GLYMA_12G089700.
DR GeneID; 100807557; -.
DR Gramene; KRH25248; KRH25248; GLYMA_12G089700.
DR KEGG; gmx:100807557; -.
DR eggNOG; KOG1985; Eukaryota.
DR HOGENOM; CLU_023158_0_0_1; -.
DR InParanoid; I1LRH3; -.
DR OMA; GTAHNIN; -.
DR OrthoDB; 10616at2759; -.
DR Proteomes; UP000008827; Chromosome 12.
DR GO; GO:0030127; C:COPII vesicle coat; IBA:GO_Central.
DR GO; GO:0070971; C:endoplasmic reticulum exit site; IBA:GO_Central.
DR GO; GO:0000149; F:SNARE binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IBA:GO_Central.
DR GO; GO:0090110; P:COPII-coated vesicle cargo loading; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR Gene3D; 1.20.120.730; Sec23/Sec24 helical domain; 1.
DR Gene3D; 3.40.50.410; von Willebrand factor, type A domain; 1.
DR Gene3D; 2.30.30.380; Zn-finger domain of Sec23/24; 1.
DR InterPro; IPR006900; Sec23/24_helical_dom.
DR InterPro; IPR036175; Sec23/24_helical_dom_sf.
DR InterPro; IPR006896; Sec23/24_trunk_dom.
DR InterPro; IPR036465; vWFA_dom_sf.
DR InterPro; IPR006895; Znf_Sec23_Sec24.
DR InterPro; IPR036174; Znf_Sec23_Sec24_sf.
DR PANTHER; PTHR13803:SF17; OS05G0443300 PROTEIN; 1.
DR PANTHER; PTHR13803; SEC24-RELATED PROTEIN; 1.
DR Pfam; PF04815; Sec23_helical; 1.
DR Pfam; PF04811; Sec23_trunk; 1.
DR Pfam; PF04810; zf-Sec23_Sec24; 1.
DR SUPFAM; SSF81995; beta-sandwich domain of Sec23/24; 1.
DR SUPFAM; SSF81811; Helical domain of Sec23/24; 1.
DR SUPFAM; SSF53300; vWA-like; 1.
DR SUPFAM; SSF82919; Zn-finger domain of Sec23/24; 1.
PE 3: Inferred from homology;
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT DOMAIN 51..83
FT /note="Zinc finger Sec23/Sec24-type"
FT /evidence="ECO:0000259|Pfam:PF04810"
FT DOMAIN 122..374
FT /note="Sec23/Sec24 trunk"
FT /evidence="ECO:0000259|Pfam:PF04811"
FT DOMAIN 502..613
FT /note="Sec23/Sec24 helical"
FT /evidence="ECO:0000259|Pfam:PF04815"
SQ SEQUENCE 747 AA; 82785 MW; BC90641C21B7ECB3 CRC64;
MAVRSTVSRF PMDTDAREGS GLLWGVTVTP FAATDENTRA PSYGSGGDLL PRCENCWAYF
NTYCELEQWS WSCSLCGNLN GLSSDAIDRY SRPQSCAEMM SSFVDLELPS QESAEVAAMQ
ACPVYVAAVD LSSSEEFLEL IKSALLAALE ALAPGSLFGL ATFSHKLGLY DVQGPIPVVK
NVFIPPDAEG TLPIELEDVM PLLQFLAPVE TCKDRIASAL ETLRPTTSWE RTTAAGQGLD
GVLIGGRGFG MAMEALCNYL GSEYGNTFAL ARVFAFLSGP PDYGAGQLDT RRYGEQYASK
GEDADRALLP EQTPFYKDLA AVAVQAGVCV DIFAVTNEYT DLASLKFLSI ESGGSLFLYT
STEDSTLPQD MYRMLSRPYA FGCVLRLRTS TEFKPGNSYG HFFPDPQYEN VQHIICCDSY
ATYAYDFVFE NNVGFSRTKS DVPTIQIAFQ YSVVVPPQEL SISNSGGVST NRTKHSLQRR
LRIRTLQFGV AQNIHELYDS CDPEVVLSLL VHKVILASLE EGVREGRILL QEWLVILTAQ
YNDAYKLIQY NNGSSVRSQI DVAFSQCPQL QPLPRLIFAL LRNPLLRFHE EGVHPDYRIY
LQCLFSMLEP SSLHRAVYPV LTSYATPDKQ AYPRHSLSRA ALITSGSPIF FLDAFTILIV
FYSSTADPTL PFPPPHDCLL RTTINKLKQE RCITPKLIFI RGGHDDASIF ENFLIEEQDV
DGSGLTSVMG FVSFLEDITQ KVLEFMK
//
