ID I1MQD7_SOYBN Unreviewed; 579 AA.
AC I1MQD7;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=GLYMA_16G209700 {ECO:0000313|EMBL:KRH09317.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH09317};
RN [1] {ECO:0000313|EMBL:KRH09317.1, ECO:0000313|EnsemblPlants:KRH09317}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH09317};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH09317.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH09317}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH09317};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH09317.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH09317.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000849; KRH09317.1; -; Genomic_DNA.
DR AlphaFoldDB; I1MQD7; -.
DR SMR; I1MQD7; -.
DR PaxDb; 3847-GLYMA16G33500-1; -.
DR EnsemblPlants; KRH09317; KRH09317; GLYMA_16G209700.
DR Gramene; KRH09317; KRH09317; GLYMA_16G209700.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; I1MQD7; -.
DR OMA; MVCANIE; -.
DR Proteomes; UP000008827; Chromosome 16.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF1934; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 5.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 75..109
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 180..214
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 281..315
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 382..417
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 418..453
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 579 AA; 63795 MW; 69B6050769F30B75 CRC64;
MAHSGVHGNN LTYPLLLKAC ANLPSIQHGT MLHGHVLKLG FQADTFVQTA LVDMYSKCSH
VASARQVFDE MPQRSVVSWN AMVSAYSRRS SMDQALSLLK EMWVLGFEPT ASTFVSILSG
YSNLDSFEFH LLGKSIHCCL IKLGIVYLEV SLANSLMGMY VQFCLMDEAR KVFDLMDEKS
IISWTTMIGG YVKIGHAVEA YGLFYQMQHQ SVGIDFVVFL NLISGCIQVR DLLLASSVHS
LVLKCGCNEK DPVENLLITM YAKCGNLTSA RRIFDLIIEK SMLSWTSMIA GYVHLGHPGE
ALDLFRRMIR TDIRPNGATL ATVVSACADL GSLSIGQEIE EYIFLNGLES DQQVQTSLIH
MYSKCGSIVK AREVFERVTD KDLTVWTSMI NSYAIHGMGN EAISLFHKMT TAEGIMPDAI
VYTSVFLACS HSGLVEEGLK YFKSMQKDFG ITPTVEHCTC LIDLLGRVGQ LDLALNAIQG
MPPDVQAQVW GPLLSACRIH GNVELGELAT VRLLDSSPGS SGSYVLMANL YTSLGKWKEA
HMMRNSMDGK GLVKESGWSQ VEVTDTYHTF AVGNQSQVA
//
