ID I1N383_SOYBN Unreviewed; 619 AA.
AC I1N383;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE RecName: Full=EGF-like calcium-binding domain-containing protein {ECO:0000259|SMART:SM00179};
GN Name=100807514 {ECO:0000313|EnsemblPlants:KRH00437};
GN ORFNames=GLYMA_18G213400 {ECO:0000313|EMBL:KRH00437.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH00437};
RN [1] {ECO:0000313|EMBL:KRH00437.1, ECO:0000313|EnsemblPlants:KRH00437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH00437};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH00437.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH00437}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH00437};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH00437.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH00437.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasmic vesicle, clathrin-coated vesicle
CC membrane {ECO:0000256|ARBA:ARBA00029430}; Single-pass type I membrane
CC protein {ECO:0000256|ARBA:ARBA00029430}. Golgi apparatus membrane
CC {ECO:0000256|ARBA:ARBA00004614}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00004614}. Membrane
CC {ECO:0000256|ARBA:ARBA00004479}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00004479}. Prevacuolar compartment membrane
CC {ECO:0000256|ARBA:ARBA00043947}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00043947}.
CC -!- SIMILARITY: Belongs to the VSR (BP-80) family.
CC {ECO:0000256|ARBA:ARBA00007038}.
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DR EMBL; CM000851; KRH00437.1; -; Genomic_DNA.
DR RefSeq; XP_003552313.1; XM_003552265.3.
DR AlphaFoldDB; I1N383; -.
DR SMR; I1N383; -.
DR STRING; 3847.I1N383; -.
DR PaxDb; 3847-GLYMA18G44580-1; -.
DR EnsemblPlants; KRH00437; KRH00437; GLYMA_18G213400.
DR GeneID; 100807514; -.
DR Gramene; KRH00437; KRH00437; GLYMA_18G213400.
DR KEGG; gmx:100807514; -.
DR eggNOG; ENOG502QSX2; Eukaryota.
DR HOGENOM; CLU_031082_1_0_1; -.
DR InParanoid; I1N383; -.
DR OMA; EVYECAI; -.
DR OrthoDB; 305396at2759; -.
DR Proteomes; UP000008827; Chromosome 18.
DR GO; GO:0005768; C:endosome; IBA:GO_Central.
DR GO; GO:0017119; C:Golgi transport complex; IBA:GO_Central.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0005802; C:trans-Golgi network; IBA:GO_Central.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0006896; P:Golgi to vacuole transport; IBA:GO_Central.
DR GO; GO:0006623; P:protein targeting to vacuole; IBA:GO_Central.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR CDD; cd00054; EGF_CA; 1.
DR Gene3D; 3.50.30.30; -; 1.
DR Gene3D; 3.40.30.10; Glutaredoxin; 1.
DR Gene3D; 2.10.25.10; Laminin; 2.
DR InterPro; IPR026823; cEGF.
DR InterPro; IPR001881; EGF-like_Ca-bd_dom.
DR InterPro; IPR018097; EGF_Ca-bd_CS.
DR InterPro; IPR009030; Growth_fac_rcpt_cys_sf.
DR InterPro; IPR046450; PA_dom_sf.
DR InterPro; IPR003137; PA_domain.
DR PANTHER; PTHR22702; PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR22702:SF1; PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12662; cEGF; 1.
DR Pfam; PF02225; PA; 1.
DR SMART; SM00179; EGF_CA; 1.
DR SUPFAM; SSF57184; Growth factor receptor domain; 1.
DR SUPFAM; SSF52025; PA domain; 1.
DR PROSITE; PS01187; EGF_CA; 1.
DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE 3: Inferred from homology;
KW Cytoplasmic vesicle {ECO:0000256|ARBA:ARBA00023329};
KW Disulfide bond {ECO:0000256|ARBA:ARBA00023157};
KW EGF-like domain {ECO:0000256|ARBA:ARBA00022536};
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Golgi apparatus {ECO:0000256|ARBA:ARBA00023034};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}; Signal {ECO:0000256|SAM:SignalP};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT SIGNAL 1..22
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 23..619
FT /note="EGF-like calcium-binding domain-containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5014579260"
FT TRANSMEM 563..583
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 513..555
FT /note="EGF-like calcium-binding"
FT /evidence="ECO:0000259|SMART:SM00179"
SQ SEQUENCE 619 AA; 68658 MW; 884BD2CA4106D3B3 CRC64;
MMGAKLGLLL CVCVLLLGCC VGRFVVEKNS LKVTSPKSLK GTYECAIGNF GVPKYGGTLV
GSVLYPKVNQ KGCTNFSDVN FQSKPGGLPT FLLVDRGDCY FTLKAWNAQN GGAAAILVAD
DKAETLITMD TPEEGKANDD YVDKISIPSA LISKSLGDSI KQALSDGEMV NINLDWRESL
PHPDDRVEYE LWTNSNDECG PKCDSLINFL KDFKGVAQQL EKRGFTQFTP RYITWFCPEA
FLLSRQCKSQ CINNGRYCAP DPEQDFSRGY DGKDVVVQNL RQACFYKVAN ESGKPWQWWD
YVTDFSIRCP MKENKYTEEC SDQVIKSLGV DLKKIKDCVG DPHADIENPV LKAEQDAQIG
KGSRGDVTIL PTLVINNRQY RGKLSRPAVL KAICSGFLET TEPSICLTSD LETNECLENN
GGCWQDKSSN ITACRDTFRG RVCECPIVQN VKFVGDGYTH CEASGSLSCQ FNNGGCWKGV
QGGRAYSACL DDYRKGCTCP PGFRGDGVQS CEDIDECKEK TACQCPGCKC KNTWGSYECK
CKSGLFYSRE NDTCFGEYSA SVLNIWVIIL VLVVAVAGGY AFYKYRIQRY MDSEIRAIMA
QYMPLDNQPE VSNQVHHNI
//
