ID I1N5I4_SOYBN Unreviewed; 506 AA.
AC I1N5I4;
DT 13-JUN-2012, integrated into UniProtKB/TrEMBL.
DT 13-JUN-2012, sequence version 1.
DT 24-JAN-2024, entry version 76.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KRG93244.1, ECO:0000313|EnsemblPlants:KRG93245};
GN Name=100819114 {ECO:0000313|EnsemblPlants:KRG93245};
GN ORFNames=GLYMA_19G005200 {ECO:0000313|EMBL:KRG93244.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRG93245};
RN [1] {ECO:0000313|EMBL:KRG93244.1, ECO:0000313|EnsemblPlants:KRG93245}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRG93245};
RC TISSUE=Callus {ECO:0000313|EMBL:KRG93244.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRG93245}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRG93245};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRG93244.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRG93244.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000256|ARBA:ARBA00004906}.
CC -!- SIMILARITY: Belongs to the WD repeat cdt2 family.
CC {ECO:0000256|ARBA:ARBA00038344}.
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DR EMBL; CM000852; KRG93244.1; -; Genomic_DNA.
DR EMBL; CM000852; KRG93245.1; -; Genomic_DNA.
DR RefSeq; XP_003554813.1; XM_003554765.3.
DR AlphaFoldDB; I1N5I4; -.
DR SMR; I1N5I4; -.
DR STRING; 3847.I1N5I4; -.
DR PaxDb; 3847-GLYMA19G00350-1; -.
DR EnsemblPlants; KRG93244; KRG93244; GLYMA_19G005200.
DR EnsemblPlants; KRG93245; KRG93245; GLYMA_19G005200.
DR GeneID; 100819114; -.
DR Gramene; KRG93244; KRG93244; GLYMA_19G005200.
DR Gramene; KRG93245; KRG93245; GLYMA_19G005200.
DR KEGG; gmx:100819114; -.
DR eggNOG; KOG0321; Eukaryota.
DR HOGENOM; CLU_038595_1_0_1; -.
DR InParanoid; I1N5I4; -.
DR OrthoDB; 196979at2759; -.
DR Proteomes; UP000008827; Chromosome 19.
DR ExpressionAtlas; I1N5I4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0030674; F:protein-macromolecule adaptor activity; IBA:GO_Central.
DR GO; GO:0043161; P:proteasome-mediated ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR22852:SF0; DENTICLELESS PROTEIN HOMOLOG; 1.
DR PANTHER; PTHR22852; LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN; 1.
DR Pfam; PF00400; WD40; 4.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT REPEAT 102..143
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 144..186
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 323..346
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 355..388
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 444..489
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 448..489
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 506 AA; 55543 MW; 81AEBD5E5FE88C91 CRC64;
MDTPSSHSLF THIASRELFR VPKRPRMDGF VSGFNETGLL AVQHNAQHTI PLSLSFCKTS
KFGHILAVSD EEGYVTLFDT RRKFPVTSNF EENSEKVKIC DWVSHHNAVF DTCWNKEDTQ
ILTASGDQTI KVWDVQEQKC LGLLTGHTGS VKSMCSHPTN SDIIVSGSRD GSFRIWDLRC
KSTAKSRCGE VSICSMGGVK GAHISSQARR TRRGRAASMS ITSVLCLKDQ VSIATAGAVD
SVLKFWDTRN LKSTVTQTSP SPQSTEKQTL HGISSLSQDE SGLFLSASCM DNRIYLYNTL
QLEKGPLKSF SGCRIESFFV KSAISPDASN IVSGSSDGNA YVWKVDKPLE DPTILKSHDG
EVTAVDWCSS EIGKLATCSD DFTVRTWNKN SYVSSTQCAS AIRRRVMAIP SIECKMLLNN
GKRYSKTNED AFLPYDALHP ITSPTPITPP KMNISEGNQL SSGLDLNASS EKTPESALKS
PSSVLNPPSS LKRTIRDYFL ASSRTL
//
