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Database: UniProt
Entry: I2HWE9_9BACI
LinkDB: I2HWE9_9BACI
Original site: I2HWE9_9BACI 
ID   I2HWE9_9BACI            Unreviewed;       175 AA.
AC   I2HWE9;
DT   11-JUL-2012, integrated into UniProtKB/TrEMBL.
DT   11-JUL-2012, sequence version 1.
DT   24-JAN-2024, entry version 48.
DE   RecName: Full=Probable DNA-directed RNA polymerase subunit delta {ECO:0000256|HAMAP-Rule:MF_00357};
DE   AltName: Full=RNAP delta factor {ECO:0000256|HAMAP-Rule:MF_00357};
GN   Name=rpoE {ECO:0000256|HAMAP-Rule:MF_00357};
GN   ORFNames=MY7_3422 {ECO:0000313|EMBL:EIF15058.1};
OS   Bacillus sp. 5B6.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=1127743 {ECO:0000313|EMBL:EIF15058.1, ECO:0000313|Proteomes:UP000005799};
RN   [1] {ECO:0000313|EMBL:EIF15058.1, ECO:0000313|Proteomes:UP000005799}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=5B6 {ECO:0000313|EMBL:EIF15058.1,
RC   ECO:0000313|Proteomes:UP000005799};
RX   PubMed=22740678; DOI=10.1128/JB.00682-12;
RA   Kim B.K., Chung J.H., Kim S.Y., Jeong H., Kang S.G., Kwon S.K., Lee C.H.,
RA   Song J.Y., Yu D.S., Ryu C.M., Kim J.F.;
RT   "Genome Sequence of the Leaf-Colonizing Bacterium Bacillus sp. Strain 5B6,
RT   Isolated from a Cherry Tree.";
RL   J. Bacteriol. 194:3758-3759(2012).
CC   -!- FUNCTION: Participates in both the initiation and recycling phases of
CC       transcription. In the presence of the delta subunit, RNAP displays an
CC       increased specificity of transcription, a decreased affinity for
CC       nucleic acids, and an increased efficiency of RNA synthesis because of
CC       enhanced recycling. {ECO:0000256|HAMAP-Rule:MF_00357}.
CC   -!- SUBUNIT: RNAP is composed of a core of 2 alpha, a beta and a beta'
CC       subunits. The core is associated with a delta subunit and one of
CC       several sigma factors. {ECO:0000256|HAMAP-Rule:MF_00357}.
CC   -!- SIMILARITY: Belongs to the RpoE family. {ECO:0000256|ARBA:ARBA00009828,
CC       ECO:0000256|HAMAP-Rule:MF_00357}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EIF15058.1}.
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DR   EMBL; AJST01000001; EIF15058.1; -; Genomic_DNA.
DR   RefSeq; WP_007614395.1; NZ_AJST01000001.1.
DR   AlphaFoldDB; I2HWE9; -.
DR   PATRIC; fig|1127743.3.peg.3349; -.
DR   Proteomes; UP000005799; Unassembled WGS sequence.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProtKB-UniRule.
DR   Gene3D; 1.10.10.1250; RNA polymerase, subunit delta, N-terminal domain; 1.
DR   HAMAP; MF_00357; RNApol_bact_RpoE; 1.
DR   InterPro; IPR007759; Asxl_HARE-HTH.
DR   InterPro; IPR038087; RNAP_delta_N_dom_sf.
DR   InterPro; IPR029757; RpoE.
DR   NCBIfam; TIGR04567; RNAP_delt_lowGC; 1.
DR   Pfam; PF05066; HARE-HTH; 1.
DR   PROSITE; PS51913; HTH_HARE; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|HAMAP-Rule:MF_00357};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695, ECO:0000256|HAMAP-
KW   Rule:MF_00357};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW   Rule:MF_00357};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|HAMAP-
KW   Rule:MF_00357}.
FT   DOMAIN          14..81
FT                   /note="HTH HARE-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51913"
FT   REGION          113..175
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   175 AA;  20737 MW;  05EE8AFE239D3189 CRC64;
     MSIKQYSQEQ LKQMALVEIA HEIFSEHKKP VPFQELLNEM ISLLGVTKEE LGDRIAQFYT
     DLNIDGRFIA LSDQTWGLRS WYPYDQLDEE TQPTVKAKKK KAKKVVEEDL DLDEFEEVDE
     DDIDLDEIEE DIDLDADSFD DEDIDEEDDD ELEIEEEMIE EDEEDYDDEE EERKD
//
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