UniProt: I3QHH5

Database: UniProt
Entry: I3QHH5_XENLA

LinkDB:  I3QHH5_XENLA 
Original site:  I3QHH5_XENLA

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Ontology (2)   
   GO (2)   
Gene (3)   
   KEGG GENES (1)   
   NCBI-Gene (1)   
   XENBASE (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (1)   
   EMBL (1)   
Protein domain (7)   
   InterPro (3)   
   Pfam (2)   
   PROSITE (1)   
   SMART (1)   
All databases (15)   

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ID   I3QHH5_XENLA            Unreviewed;       476 AA.
AC   I3QHH5;
DT   05-SEP-2012, integrated into UniProtKB/TrEMBL.
DT   05-SEP-2012, sequence version 1.
DT   27-MAR-2024, entry version 51.
DE   SubName: Full=Sex determining region Y-box 9 {ECO:0000313|EMBL:AFK08429.1};
DE   SubName: Full=Transcription factor Sox-9-B isoform X1 {ECO:0000313|RefSeq:XP_041431614.1};
GN   Name=sox9.L {ECO:0000313|RefSeq:XP_041431614.1,
GN   ECO:0000313|Xenbase:XB-GENE-1034775};
GN   Synonyms=cmd1 {ECO:0000313|RefSeq:XP_041431614.1}, cmpd1
GN   {ECO:0000313|RefSeq:XP_041431614.1}, sox-9
GN   {ECO:0000313|EMBL:AFK08429.1, ECO:0000313|RefSeq:XP_041431614.1}, sox9
GN   {ECO:0000313|EMBL:AFK08429.1, ECO:0000313|RefSeq:XP_041431614.1},
GN   sox9-a {ECO:0000313|RefSeq:XP_041431614.1}, sox9-b
GN   {ECO:0000313|EMBL:AFK08429.1, ECO:0000313|RefSeq:XP_041431614.1},
GN   sox9b {ECO:0000313|RefSeq:XP_041431614.1}, sra1
GN   {ECO:0000313|RefSeq:XP_041431614.1};
OS   Xenopus laevis (African clawed frog).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus.
OX   NCBI_TaxID=8355 {ECO:0000313|EMBL:AFK08429.1};
RN   [1] {ECO:0000313|EMBL:AFK08429.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Jacobi U.G., Francoijs K.-J., Veenstra G.J.C.;
RT   "Xenopus laevis promoter sequences.";
RL   Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|RefSeq:XP_041431614.1}
RP   IDENTIFICATION.
RC   STRAIN=J_2021 {ECO:0000313|RefSeq:XP_041431614.1};
RC   TISSUE=Erythrocytes {ECO:0000313|RefSeq:XP_041431614.1};
RG   RefSeq;
RL   Submitted (NOV-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; JQ715715; AFK08429.1; -; Genomic_DNA.
DR   RefSeq; NP_001087942.1; NM_001094473.1.
DR   RefSeq; XP_041431614.1; XM_041575680.1.
DR   DNASU; 494585; -.
DR   GeneID; 494585; -.
DR   KEGG; xla:494585; -.
DR   AGR; Xenbase:XB-GENE-1034775; -.
DR   CTD; 494585; -.
DR   Xenbase; XB-GENE-1034775; sox9.L.
DR   OrthoDB; 2902801at2759; -.
DR   Proteomes; UP000186698; Chromosome 9_10L.
DR   Bgee; 494585; Expressed in internal ear and 17 other cell types or tissues.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   CDD; cd22031; HMG-box_SoxE; 1.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR022151; Sox_N.
DR   PANTHER; PTHR45803; SOX100B; 1.
DR   PANTHER; PTHR45803:SF1; TRANSCRIPTION FACTOR SOX-9; 1.
DR   Pfam; PF00505; HMG_box; 1.
DR   Pfam; PF12444; Sox_N; 1.
DR   SMART; SM00398; HMG; 1.
DR   SUPFAM; SSF47095; HMG-box; 1.
DR   PROSITE; PS50118; HMG_BOX_2; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW   ProRule:PRU00267}; Isopeptide bond {ECO:0000256|ARBA:ARBA00022499};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW   ProRule:PRU00267}; Reference proteome {ECO:0000313|Proteomes:UP000186698};
KW   Ubl conjugation {ECO:0000256|ARBA:ARBA00022843}.
FT   DOMAIN          105..173
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DNA_BIND        105..173
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          1..67
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          157..197
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          209..274
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          318..383
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          443..476
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        18..53
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        157..187
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        209..233
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        247..274
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   476 AA;  53320 MW;  5F3B83C97613FD00 CRC64;
     MNLLDPFMKM SEEQDKCLSG APSPTMSEDS AGSPCPSGSG SDTENTRPQE NTFPKGDQEM
     KKETEDEKFP VCIREAVSQV LKGYDWTLVP MPVRVNGSSK NKPHVKRPMN AFMVWAQAAR
     RKLADQYPHL HNAELSKTLG KLWRLLNEGE KRPFVEEAER LRVQHKKDHP DYKYQPRRRK
     SVKNGQSEQD DSAEQTHISP NAIFKALQAD SPHSTSSMSE VHSPGEHSGQ SQGPPTPPTT
     PKTDVQPGKP DLKREGRPLQ ESGRQPPHID FRDVDIGELS SEVISTIETF DVNEFDQYLP
     PNGHPGVGSA QAPYTGSYGI SSTPSATTGA GSAWMSKQQQ QPQQHSLSTI NSEQSQSQQR
     THIKTEQLSP SHYSDQQQQH SPQQLNYSSF NLQHYSSSYP TITRAQYDYT EHQGSNSYYT
     HASGQNSGLY SNFTYMNPSQ RPMYTPIADT TGVPSIPQTH SPQHWEQPVY TQLTRP
//

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