ID J3AGH2_9SPHN Unreviewed; 352 AA.
AC J3AGH2;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE SubName: Full=Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJL30874.1};
GN ORFNames=PMI02_01940 {ECO:0000313|EMBL:EJL30874.1};
OS Novosphingobium sp. AP12.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Novosphingobium.
OX NCBI_TaxID=1144305 {ECO:0000313|EMBL:EJL30874.1, ECO:0000313|Proteomes:UP000007515};
RN [1] {ECO:0000313|EMBL:EJL30874.1, ECO:0000313|Proteomes:UP000007515}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AP12 {ECO:0000313|EMBL:EJL30874.1,
RC ECO:0000313|Proteomes:UP000007515};
RX PubMed=23045501; DOI=10.1128/JB.01243-12;
RA Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT sequences from diverse bacteria isolated from the rhizosphere and
RT endosphere of Populus deltoides.";
RL J. Bacteriol. 194:5991-5993(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJL30874.1}.
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DR EMBL; AKKE01000049; EJL30874.1; -; Genomic_DNA.
DR AlphaFoldDB; J3AGH2; -.
DR STRING; 1144305.PMI02_01940; -.
DR eggNOG; COG4977; Bacteria.
DR OrthoDB; 186587at2; -.
DR Proteomes; UP000007515; Unassembled WGS sequence.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd03136; GATase1_AraC_ArgR_like; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002818; DJ-1/PfpI.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR018062; HTH_AraC-typ_CS.
DR InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR PANTHER; PTHR43130; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR43130:SF3; THIJ_PFPI FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14240); 1.
DR Pfam; PF01965; DJ-1_PfpI; 1.
DR Pfam; PF12833; HTH_18; 1.
DR PRINTS; PR00032; HTHARAC.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF52317; Class I glutamine amidotransferase-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000313|EMBL:EJL30874.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000007515}.
FT DOMAIN 224..322
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 352 AA; 38303 MW; F6F82906B68579F6 CRC64;
MPISDNHVDF SMRRLGFVLI DGFALMSYAS VVEPYRAANM LAGRPLYSWV HISVAGDPCQ
ASNGATFLAD QAVGERADCD TLFVFAGGDP TDFDDPATFA WLRETAARGI VIVGISAGPY
LLARAGLLDG YQATIHWEHL PAFLAEFPTS APQTGLYVID RRRITCAGGM AGMDLAVELI
EREQGHALAA QVSDWFIRSE QRGADRPQRL SLRDRYGVAN DRVLRVLAQM EACVEDPLSR
SNLAAIASVS VRQLERLFGS NLGATVSQIY MRIRLSQSEQ MLRTTALPIT EVALACGFKT
SSHFSRSFKE QFGKAPSDLR ARGWCVQGKA ATAIFPTASV RALPPSTDAV PQ
//
