ID   J3CZ85_9BURK            Unreviewed;       531 AA.
AC   J3CZ85;
DT   03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2012, sequence version 1.
DT   27-MAR-2024, entry version 47.
DE   SubName: Full=Sigma54-dependent transcription regulator containing an AAA-type ATPase domain {ECO:0000313|EMBL:EJL81504.1};
GN   ORFNames=PMI15_03413 {ECO:0000313|EMBL:EJL81504.1};
OS   Polaromonas sp. CF318.
OC   Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Polaromonas.
OX   NCBI_TaxID=1144318 {ECO:0000313|EMBL:EJL81504.1, ECO:0000313|Proteomes:UP000007275};
RN   [1] {ECO:0000313|EMBL:EJL81504.1, ECO:0000313|Proteomes:UP000007275}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CF318 {ECO:0000313|EMBL:EJL81504.1,
RC   ECO:0000313|Proteomes:UP000007275};
RX   PubMed=23045501; DOI=10.1128/JB.01243-12;
RA   Brown S.D., Utturkar S.M., Klingeman D.M., Johnson C.M., Martin S.L.,
RA   Land M.L., Lu T.Y., Schadt C.W., Doktycz M.J., Pelletier D.A.;
RT   "Twenty-one genome sequences from Pseudomonas species and 19 genome
RT   sequences from diverse bacteria isolated from the rhizosphere and
RT   endosphere of Populus deltoides.";
RL   J. Bacteriol. 194:5991-5993(2012).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EJL81504.1}.
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DR   EMBL; AKIV01000086; EJL81504.1; -; Genomic_DNA.
DR   RefSeq; WP_007871622.1; NZ_AKIV01000086.1.
DR   AlphaFoldDB; J3CZ85; -.
DR   PATRIC; fig|1144318.3.peg.3299; -.
DR   OrthoDB; 9761705at2; -.
DR   Proteomes; UP000007275; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR009715; RtcR.
DR   InterPro; IPR017183; Sigma54_dep_tscrpt_act_RtcR.
DR   InterPro; IPR002078; Sigma_54_int.
DR   NCBIfam; NF038308; RNA_repair_RtcR; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   PANTHER; PTHR32071:SF14; TRANSCRIPTIONAL REGULATORY PROTEIN RTCR; 1.
DR   Pfam; PF06956; RtcR; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PIRSF; PIRSF037354; Txn_actvtr_RtcR; 1.
DR   SMART; SM00382; AAA; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT   DOMAIN          184..422
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
SQ   SEQUENCE   531 AA;  58813 MW;  AFA9B41B6622ACA0 CRC64;
     MKKKVVMGFL GTQLDSGLGS GRWEKWRPTV SIAQHEDLLI DRLELMHDAR NKPLAERVRD
     DVAQLSPGTE VRLVEMNLAN PWDFGEVYGA LYDWMRAYSF DTEHEEYWAH ITTGTHVAQI
     CLFLLVEARF IPGVLLQTAP PRGRQAQGIG SYELIDLDLS RYDAINARLA VAQQDAVSFL
     KSGIATRNPR FNTMIEEIER IAVQSKAPIL LTGPTGAGKS MLARRIYELK KSRHQVGGGF
     VDVNCATLHG DGAGSTLFGH KKGAFTGAAG DRPGLLRTAD KGVLFLDEIG ELGLDEQAML
     LKAVEEKRFL PVGADKEVES SFQLIAGTNK DLRAEVARGR FREDLFARIN LWTYTLPGLG
     QRREDIEPNM DHQLMLASED LGRKTRMTTE ARAAYLRFAQ SAEAVWTGNF RDLSASITRL
     ATLGDNGRIG LALVEAEIAR LRWQWQATEA QVGAGGVSLA ALMGGAADAL DYFDQLQLQA
     VIEVCRKSAS LSDAGRALFN VSRTQRSVVN DADRLRKYLM KFDLTWEKLS A
//