ID J3LME6_ORYBR Unreviewed; 533 AA.
AC J3LME6;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767};
GN Name=102705993 {ECO:0000313|EnsemblPlants:OB03G22220.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB03G22220.1};
RN [1] {ECO:0000313|EnsemblPlants:OB03G22220.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB03G22220.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB03G22220.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of plastid-encoded RNA polymerase (PEP) to specific
CC initiation sites and are then released.
CC {ECO:0000256|PIRNR:PIRNR000767}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|PIRNR:PIRNR000767}.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788, ECO:0000256|PIRNR:PIRNR000767}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR RefSeq; XP_006651247.1; XM_006651184.2.
DR AlphaFoldDB; J3LME6; -.
DR STRING; 4533.J3LME6; -.
DR EnsemblPlants; OB03G22220.1; OB03G22220.1; OB03G22220.
DR GeneID; 102705993; -.
DR Gramene; OB03G22220.1; OB03G22220.1; OB03G22220.
DR KEGG; obr:102705993; -.
DR eggNOG; ENOG502QVXR; Eukaryota.
DR HOGENOM; CLU_014793_0_1_1; -.
DR OMA; KMVEANT; -.
DR OrthoDB; 33789at2759; -.
DR Proteomes; UP000006038; Chromosome 3.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:UniProtKB-UniRule.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR016262; RNA_pol_sigma_SigB/C/D/F.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603:SF25; RNA POLYMERASE SIGMA FACTOR; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PIRSF; PIRSF000767; RNA_pol_sigma_SigB/C/D; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000256|PIRNR:PIRNR000767};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000767};
KW Plastid {ECO:0000256|PIRNR:PIRNR000767};
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW ECO:0000256|PIRNR:PIRNR000767};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000767};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000767}.
FT DOMAIN 488..514
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
SQ SEQUENCE 533 AA; 59148 MW; A62E3C5861885770 CRC64;
MACLAPQFKW PPSTRAASPA FREHTAGGGG SGGFRAVRLY CAVSTTTLVE AEISESLAAG
AVALPPHPSS ALPGGFGEAI LNQAAVVAAA AAEAVALARA AAEVAGEVAR MAQTDQRHRP
DFVTTCDTED NYLAREILRA EVGSRARYAE DAGFSSIFSD ESEIDDDEQC IQGVAVKSVR
QSERRARRVR AAMKSAKSFS CRNSVAASSR KKRLKGCRSP LGCFYKMTGR RLLTAKQEVE
FSQGIQDLLK LEAIQKELAH YSSGEPTFSQ WAEAAGTDEN ALRKRLNYGI YCKNTMVKSN
VRLVISIARE FEGPGMEFSD LIQEGIQGLV RGAEKFDASK GFRFSTYSHW WIKQAIRKSV
LEQTQIIRLP AHMAEASSRV KECQRRLRRQ LKRLPTNEEI ASDTGLPLRR VEAAMSLPKY
SVSLTGKVGC TDMTYQEITP DTSAETAEQM LHRWLMKKDV DMALDGLSPR ERQVIRYRFG
MDDGRLRTLH DTGKLMGVSR ERIRQIELGA FRKLRGRKTV QSLQHYLQPV ESW
//
