ID J3NBM3_ORYBR Unreviewed; 599 AA.
AC J3NBM3;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=102712405 {ECO:0000313|EnsemblPlants:OB12G13810.1};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G13810.1};
RN [1] {ECO:0000313|EnsemblPlants:OB12G13810.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G13810.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB12G13810.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
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DR RefSeq; XP_015698464.1; XM_015842978.1.
DR AlphaFoldDB; J3NBM3; -.
DR STRING; 4533.J3NBM3; -.
DR EnsemblPlants; OB12G13810.1; OB12G13810.1; OB12G13810.
DR GeneID; 102712405; -.
DR Gramene; OB12G13810.1; OB12G13810.1; OB12G13810.
DR KEGG; obr:102712405; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR OMA; HLINCYV; -.
DR OrthoDB; 1201745at2759; -.
DR Proteomes; UP000006038; Chromosome 12.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR24015:SF2026; DYW DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}; Signal {ECO:0000256|SAM:SignalP};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT SIGNAL 1..23
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 24..599
FT /note="DYW domain-containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5003775078"
FT REPEAT 76..110
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 179..213
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 282..316
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 519..599
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 599 AA; 64111 MW; 11C1F846386F760E CRC64;
MAATPKAAAP ATLMPLLIHL LRGASDLASV SATHAKLLKL GADASVASSN HLLAAYCRCG
STAPARRLFD GMPDRNVVSW TALMSGYASA GRPRAAVALL RAMVLSGVAP NAFTFSTAAS
ACARLADAGL GRQVHACAEV AGYACDNVVA TALVDMYGKA GSVRDARAMF DAMPATARNI
VSWASMLSVY AQNALGHDAI QLFAELRSNG EDMAPNHFIL SSVVSACAGV GRLGIGRCLH
GMVLRHGHED NDVVAVALVD MYSKCGCYEY SKKVFDNIKQ PSVISYTSII VATAKYGLGR
CALALFSDMV DRGVQPNSVT LLGVLHACSH SGLVDIGLHL LHSMRSKYGI DPCASHYTCA
VDMLGRAGQL EEAFELANEA RLDGNDDLLL WSSLLSSCRN HKRLDLATKA GKKVSEFSQD
VAGALVVMSN AYASAGQADD AAAVWSNMRQ RSIRKDPGCS WIEIKDVPYV FYAGVASPAG
ARADDVMLLL DELETKMREK GYKGRIGGAR VLDADEEVDE DHHDEGKGVM VGVHSEMLTL
GFGLLVIPKG MIIRVMKNLR MCCGCHEAFK LISDIMEREF VVRDLNRFHH FRRGSCSCN
//
