ID J3NE62_ORYBR Unreviewed; 653 AA.
AC J3NE62;
DT 03-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 03-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 49.
DE RecName: Full=Smr domain-containing protein {ECO:0000259|PROSITE:PS50828};
OS Oryza brachyantha (malo sina).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4533 {ECO:0000313|EnsemblPlants:OB12G22700.1};
RN [1] {ECO:0000313|EnsemblPlants:OB12G22700.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IRGC 101232 {ECO:0000313|EnsemblPlants:OB12G22700.1};
RX PubMed=23481403;
RA Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z.,
RA Luis Goicoechea J., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X.,
RA Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q.,
RA An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z.,
RA Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J.,
RA Chen M.;
RT "Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying
RT Oryza genome evolution.";
RL Nat. Commun. 4:1595-1595(2013).
RN [2] {ECO:0000313|EnsemblPlants:OB12G22700.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2013) to UniProtKB.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR AlphaFoldDB; J3NE62; -.
DR STRING; 4533.J3NE62; -.
DR EnsemblPlants; OB12G22700.1; OB12G22700.1; OB12G22700.
DR Gramene; OB12G22700.1; OB12G22700.1; OB12G22700.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_5_1; -.
DR OMA; FQRMHEL; -.
DR Proteomes; UP000006038; Chromosome 12.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0003677; F:DNA binding; IEA:EnsemblPlants.
DR GO; GO:0010019; P:chloroplast-nucleus signaling pathway; IEA:EnsemblPlants.
DR GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IEA:EnsemblPlants.
DR Gene3D; 3.30.1370.110; -; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR036063; Smr_dom_sf.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 9.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR PANTHER; PTHR47447:SF30; PPR CONTAINING PLANT PROTEIN; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 2.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF160443; SMR domain-like; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 9.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000006038};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 22..56
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 57..92
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 93..127
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 128..162
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 163..197
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 198..232
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 233..267
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 268..302
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 303..337
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 527..616
FT /note="Smr"
FT /evidence="ECO:0000259|PROSITE:PS50828"
SQ SEQUENCE 653 AA; 72415 MW; DA6887154463260E CRC64;
MGRSDLARRA FDAGVAGGYG NTVFAHSALI SAYARSGLAN EAMGVLELMK GAGLRPTTVS
YNAVIDACGK GGVDLRFTLG YFRQMLKDGL CPDRKTFNSL LAACSRAGHL EDARAVFDEM
IHLGIGRDIY TYNTFIDAIC KCGNMELAMQ VLLDMEAKGV KPNVVTYSTL IDGYSKLEKY
EEALKLCEKM KSLRIQLDRV CYNTLLAIYV KTGKYTEIAN VCDEMEELGI EKDTVTYNSL
INGYGKQGRL DIVSILVQDM RKRGIAPSVL TYSTLIDIYS KAGMHGDAFN VYLDFKESGL
KPDVVLFSSF IDTLAKNGLI EWALSLLNDM TEMGIKPNVV TYNAIIDAFG KSKVITEDDP
EVGDMGIVGV YGGQIVRVVN PMSRGGRPAT EIRMRRSQEL FFILELFQKM VQQGVRPNVV
TFSAILNACS RCNSFEDAAL LLEQLRLFDN FVYGVAYGLL VGSREVWSQA QSLFNQLGRM
DSPTSSAFYN ALTDVLWHFG QRRRAQQVVF EGINRRVWEN TWGEFCLDLH LMSCGAAQAM
VHAWLLNVRS IVFEGRAMPE FLSILTGWGK HSRIAGASTL RRVIEALLNS IGAPFQVERF
NIGRFVSPSA VVAAWLRESG TVNILLLHDE RVQQQAASPS PNHLVPRLQA LQL
//
