ID J9IIS9_9SPIT Unreviewed; 487 AA.
AC J9IIS9;
DT 31-OCT-2012, integrated into UniProtKB/TrEMBL.
DT 31-OCT-2012, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE RecName: Full=Nop domain-containing protein {ECO:0000259|PROSITE:PS51358};
GN ORFNames=OXYTRI_21539 {ECO:0000313|EMBL:EJY81067.1};
OS Oxytricha trifallax.
OC Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata; Spirotrichea;
OC Stichotrichia; Sporadotrichida; Oxytrichidae; Oxytrichinae; Oxytricha.
OX NCBI_TaxID=1172189 {ECO:0000313|EMBL:EJY81067.1};
RN [1] {ECO:0000313|EMBL:EJY81067.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JRB310 {ECO:0000313|EMBL:EJY81067.1};
RX PubMed=23382650; DOI=10.1371/journal.pbio.1001473;
RA Swart E.C., Bracht J.R., Magrini V., Minx P., Chen X., Zhou Y.,
RA Khurana J.S., Goldman A.D., Nowacki M., Schotanus K., Jung S., Fulton R.S.,
RA Ly A., McGrath S., Haub K., Wiggins J.L., Storton D., Matese J.C.,
RA Parsons L., Chang W.J., Bowen M.S., Stover N.A., Jones T.A., Eddy S.R.,
RA Herrick G.A., Doak T.G., Wilson R.K., Mardis E.R., Landweber L.F.;
RT "The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome
RT with 16,000 Tiny Chromosomes.";
RL PLoS Biol. 11:E1001473-E1001473(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the PRP31 family.
CC {ECO:0000256|ARBA:ARBA00005572}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EJY81067.1}.
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DR EMBL; AMCR01007182; EJY81067.1; -; Genomic_DNA.
DR AlphaFoldDB; J9IIS9; -.
DR EnsemblProtists; EJY81067; EJY81067; OXYTRI_21539.
DR OrthoDB; 4493115at2759; -.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000244; P:spliceosomal tri-snRNP complex assembly; IEA:InterPro.
DR Gene3D; 1.10.287.4070; -; 1.
DR Gene3D; 1.10.246.90; Nop domain; 1.
DR InterPro; IPR042239; Nop_C.
DR InterPro; IPR002687; Nop_dom.
DR InterPro; IPR036070; Nop_dom_sf.
DR InterPro; IPR012976; NOSIC.
DR InterPro; IPR027105; Prp31.
DR InterPro; IPR019175; Prp31_C.
DR PANTHER; PTHR13904; PRE-MRNA SPLICING FACTOR PRP31; 1.
DR PANTHER; PTHR13904:SF0; U4_U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31; 1.
DR Pfam; PF01798; Nop; 1.
DR Pfam; PF09785; Prp31_C; 1.
DR SMART; SM00931; NOSIC; 1.
DR SUPFAM; SSF89124; Nop domain; 1.
DR PROSITE; PS51358; NOP; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 193..311
FT /note="Nop"
FT /evidence="ECO:0000259|PROSITE:PS51358"
FT REGION 314..337
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 487 AA; 54582 MW; C3793685C2BC1E8F CRC64;
MREDDENQDD DYQEYEQREQ KIERLIAKNY QSKIRGNPQF IEHLTNLQSD LTGQQLARFK
NLSAKDQQHQ LIIATNDYLK HIDNDILIVH KQLRDAFEHK FSELESIILN PLDYARAVKE
IGNIEDITRI IDNLNWLPNQ SLMSVTVAFS ASSGRQLSEK ELQEVLRIAD EVILLNDQKA
QMLNYLETRM SSVAPNVSAI VGTRVAAKLI AAAGGIGELA KIPASNIQVL GSQKKALHGM
STASAQLHRG VLTEVDMYQN TPPQFQMQVV RMLSSKTALA ARMDSAGAST DGKQGQEWKQ
GIMIRFGKIS TPQQAKLRKA LPKPDDKPRR KRGGKKFRNM RLKYQVTQAR KMQNIIPFGE
EGQKEFRDTG FGMGMIGMSS GKLKVGIQKN QNILNKKKFS QQSRITTGGS GVTNGLASSI
AMSTQHGMEL LNPDILERQV REAQNAGNQS SYFNSKSGFN TVLNLRKSNQ STATQNNQST
YNQNMIL
//
