ID J9Z543_9SPER Unreviewed; 543 AA.
AC J9Z543;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE SubName: Full=Phytochrome P {ECO:0000313|EMBL:AFS51088.1};
DE Flags: Fragment;
GN Name=PHYP {ECO:0000313|EMBL:AFS51088.1};
OS Taxus sumatrana.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Pinopsida; Pinidae; Conifers II; Cupressales; Taxaceae;
OC Taxus.
OX NCBI_TaxID=450883 {ECO:0000313|EMBL:AFS51088.1};
RN [1] {ECO:0000313|EMBL:AFS51088.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=22988083; DOI=10.1073/pnas.1213621109;
RA Leslie A.B., Beaulieu J.M., Rai H.S., Crane P.R., Donoghue M.J.,
RA Mathews S.;
RT "Hemisphere-scale differences in conifer evolutionary dynamics.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:16217-16221(2012).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; JX559905; AFS51088.1; -; Genomic_DNA.
DR AlphaFoldDB; J9Z543; -.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 34..208
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 433..504
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:AFS51088.1"
FT NON_TER 543
FT /evidence="ECO:0000313|EMBL:AFS51088.1"
SQ SEQUENCE 543 AA; 59451 MW; 8BF52C10C624B8B6 CRC64;
DAAALVSWGG GGSVPSQRLA VRATSRLQAV PSGDIGLLCD TVVEEVRELT GYDRVMVYKF
HEDEHGEVVA EIRRSDLEPY LGLHYPATDI PQASRFLFMQ NRVRMICDCR ATPVKVIQSG
ELKQPLCLVG STLRAPHGCH AQYMANMGSI ASLVMAVIVN GNGNGNDEDG GGGSGRSSMK
LWGLVVCHHT SPRAVPFPLR SACEFLMQTF GLQINMELQL AVQLIENNIL RTQTLLCDML
LRDAPIGIVT QSPSIMDLVK CDGAALYYGG MCWLLGVTPM EAQIKDIAEW LLECHGDSTG
LSTDSLADTG YPGAASLGDA VCGMAAARIT SKDFLFWFRS HTAKEMKWGG AKHHPDDKDD
GRRMHPRSSF KAFLEVVKRR SLPWENVEMD AIHSLQLILR GSFQDIDDSD TKTMVHARLN
DLKLQGIDEL SSVASEMVRL IETATAPILA VDSSGIVNGW NAKVGELTGL PVGEAMGKSL
VHDLVFDESV ETVEKMLYHA MRGEEEKNVE IKLRTFGPQK QKKVIYLVVN ACSSRDYTDN
IVG
//
