ID K3YMY5_SETIT Unreviewed; 641 AA.
AC K3YMY5;
DT 28-NOV-2012, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2012, sequence version 1.
DT 27-MAR-2024, entry version 59.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=SETIT_6G207200v2 {ECO:0000313|EMBL:RCV31804.1};
OS Setaria italica (Foxtail millet) (Panicum italicum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria.
OX NCBI_TaxID=4555 {ECO:0000313|EMBL:RCV31804.1};
RN [1] {ECO:0000313|EMBL:RCV31804.1, ECO:0000313|Proteomes:UP000004995}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Yugu1 {ECO:0000313|EnsemblPlants:KQL02451,
RC ECO:0000313|Proteomes:UP000004995}, and Yugu1
RC {ECO:0000313|EMBL:RCV31804.1};
RX PubMed=22580951; DOI=10.1038/nbt.2196;
RA Bennetzen J.L., Schmutz J., Wang H., Percifield R., Hawkins J.,
RA Pontaroli A.C., Estep M., Feng L., Vaughn J.N., Grimwood J., Jenkins J.,
RA Barry K., Lindquist E., Hellsten U., Deshpande S., Wang X., Wu X.,
RA Mitros T., Triplett J., Yang X., Ye C.Y., Mauro-Herrera M., Wang L., Li P.,
RA Sharma M., Sharma R., Ronald P.C., Panaud O., Kellogg E.A., Brutnell T.P.,
RA Doust A.N., Tuskan G.A., Rokhsar D., Devos K.M.;
RT "Reference genome sequence of the model plant Setaria.";
RL Nat. Biotechnol. 30:555-561(2012).
RN [2] {ECO:0000313|EMBL:RCV31804.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Yugu1 {ECO:0000313|EMBL:RCV31804.1};
RA Noorani M.;
RL Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQL02451}
RP IDENTIFICATION.
RC STRAIN=Yugu1 {ECO:0000313|EnsemblPlants:KQL02451};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; AGNK02003974; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM003533; RCV31804.1; -; Genomic_DNA.
DR AlphaFoldDB; K3YMY5; -.
DR STRING; 4555.K3YMY5; -.
DR EnsemblPlants; KQL02451; KQL02451; SETIT_015619mg.
DR Gramene; KQL02451; KQL02451; SETIT_015619mg.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_6_1; -.
DR InParanoid; K3YMY5; -.
DR OMA; EQRHIVI; -.
DR OrthoDB; 443283at2759; -.
DR Proteomes; UP000004995; Chromosome VI.
DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR47924; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000004995};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 136..171
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 235..269
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 303..333
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 334..368
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 549..641
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 641 AA; 70644 MW; 2B12089C41B2EC63 CRC64;
MNSLFKRLLR NRLAGTRRSS RRLHTQPHSH PHPLLATFSR LCVEGPFATA LALLPDLASV
GLRADPVSLT RLVKLCVRHG MASDGRLIHR HVAAYGALPH GGGGGLFVSN SLVSMYAKFG
LLDDALMLFD GMPERNVVTW TTVVAALANA DGRKEEALRF LVAMRRDGVA PNAYTFSSVL
GACGTPGVLA AMHASTVKVG LDSDVFVRSS LIDAYMKLGD LDGGRGVFDE MVTGDLVVWN
SIIAGFAQSG DGAGAIELFV RMKDAGFSAN QGTLTSVLRA CTGMVMLEVG RQVHAHVIKY
QKDLILHNAL LDMYCKCGSL QDAGALFRRM PQRDVISWST MISGLAQNGR STEALRVFDL
MKSEGVAPNR ITLVGVLFAC SHAGLVEDGW YYFKSMEKLF GIRPEREHHN CMVDLLGRAG
KLDEAVEFIH EMSLDADSVI WRTLLGACRM HKNANLAAYA AREILKLEPD DQGARVLLSN
TYADLQQWTD AEKPWKAMRD RGMKKEPGRS WIELEKQVHV FIAGDLSHPI SDSIVQELNR
LIGRISALGY VPQTEFVLQD LAIEQKEDLL KYHSEKLAIA FGTMHAMEGK PIRIMKNLRI
CGDCHAFAKL VSKSEGKVII IRDPVRFHHF QDGTCSCGDY W
//
