ID K4KL18_SIMAS Unreviewed; 462 AA.
AC K4KL18;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 18-SEP-2013, sequence version 2.
DT 27-MAR-2024, entry version 47.
DE RecName: Full=HDOD domain-containing protein {ECO:0000259|PROSITE:PS51833};
GN OrderedLocusNames=M5M_12720 {ECO:0000313|EMBL:AFU99696.2};
OS Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Cellvibrionales;
OC Cellvibrionaceae; Simiduia.
OX NCBI_TaxID=1117647 {ECO:0000313|EMBL:AFU99696.2, ECO:0000313|Proteomes:UP000000466};
RN [1] {ECO:0000313|EMBL:AFU99696.2, ECO:0000313|Proteomes:UP000000466}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 21679 / JCM 13881 / BCRC 17597 / SA1
RC {ECO:0000313|Proteomes:UP000000466};
RX PubMed=23405302; DOI=10.1128/genomeA.00039-12;
RA Lin S.Y., Shieh W.Y., Chen J.S., Tang S.L.;
RT "Complete genome sequence of Simiduia agarivorans SA1(T), a marine
RT bacterium able to degrade a variety of polysaccharides.";
RL Genome Announc. 1:E00039-E00039(2013).
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DR EMBL; CP003746; AFU99696.2; -; Genomic_DNA.
DR RefSeq; WP_016389416.1; NZ_ATUQ01000008.1.
DR AlphaFoldDB; K4KL18; -.
DR STRING; 1117647.M5M_12720; -.
DR KEGG; saga:M5M_12720; -.
DR eggNOG; COG1639; Bacteria.
DR eggNOG; COG2606; Bacteria.
DR HOGENOM; CLU_046996_0_0_6; -.
DR OrthoDB; 7001648at2; -.
DR Proteomes; UP000000466; Chromosome.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR CDD; cd04332; YbaK_like; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.90.960.10; YbaK/aminoacyl-tRNA synthetase-associated domain; 1.
DR InterPro; IPR013976; HDOD.
DR InterPro; IPR014627; UCP036888_HDGYP-like.
DR InterPro; IPR036754; YbaK/aa-tRNA-synt-asso_dom_sf.
DR InterPro; IPR007214; YbaK/aa-tRNA-synth-assoc-dom.
DR PANTHER; PTHR33525; -; 1.
DR PANTHER; PTHR33525:SF3; RIBONUCLEASE Y; 1.
DR Pfam; PF08668; HDOD; 1.
DR Pfam; PF04073; tRNA_edit; 1.
DR PIRSF; PIRSF036888; HDGYPm_UCP036888; 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR SUPFAM; SSF55826; YbaK/ProRS associated domain; 1.
DR PROSITE; PS51833; HDOD; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000466}.
FT DOMAIN 189..389
FT /note="HDOD"
FT /evidence="ECO:0000259|PROSITE:PS51833"
SQ SEQUENCE 462 AA; 50833 MW; BBA0D161090EA6E4 CRC64;
MSISASVVQF LDKQALNYLL TDPLSGPNWH DQRLMNHSAA RATLLENDEE KLLAIYPADA
LLDLEAVNRL LGLDTRAMSP ATLRGLFEKH KLSSVPALPG LAGMTTVIEQ SLFDRSHLYL
DAGSRDQLLE LPADAFASMA KEAIVGDIAV PLINLEMPQD ESDESIILKS VSQFTEQRIK
DRLEETLELP PLPETAQRII KLRVDPNADI SDLANIVETD PSLAAQVVSW AASPYYSAPG
KIKSIHDAIV RVLGFDMVLN LALGLALGKT LSLPKDGPFG VTPYWRQSVY MAAAMEGLVT
AIPRESRPGF GMAYLSGLLF NFGYLVMAEV FPPHFTKICR SQEANPHADY TLSERHLLGM
TRDQIASWLM QVWNMPEEVV FALRQQHNPL CQGEHAAYAK LLFVARRLLA QRGLGCGPKR
DIPAQVYEDL QLDPAKAEAT INNILESSAE LENIASQMAP AA
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