ID K7KQR0_SOYBN Unreviewed; 1058 AA.
AC K7KQR0;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 27-MAR-2024, entry version 64.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100784581 {ECO:0000313|EnsemblPlants:KRH59203};
GN ORFNames=GLYMA_05G170800 {ECO:0000313|EMBL:KRH59205.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH59205.1};
RN [1] {ECO:0000313|EMBL:KRH59205.1, ECO:0000313|EnsemblPlants:KRH59203}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH59203};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH59205.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH59203}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH59203};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH59205.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH59205.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000838; KRH59203.1; -; Genomic_DNA.
DR EMBL; CM000838; KRH59204.1; -; Genomic_DNA.
DR EMBL; CM000838; KRH59205.1; -; Genomic_DNA.
DR RefSeq; XP_006580234.1; XM_006580171.2.
DR AlphaFoldDB; K7KQR0; -.
DR SMR; K7KQR0; -.
DR STRING; 3847.K7KQR0; -.
DR PaxDb; 3847-GLYMA05G30470-3; -.
DR EnsemblPlants; KRH59203; KRH59203; GLYMA_05G170800.
DR EnsemblPlants; KRH59204; KRH59204; GLYMA_05G170800.
DR EnsemblPlants; KRH59205; KRH59205; GLYMA_05G170800.
DR GeneID; 100784581; -.
DR Gramene; KRH59203; KRH59203; GLYMA_05G170800.
DR Gramene; KRH59204; KRH59204; GLYMA_05G170800.
DR Gramene; KRH59205; KRH59205; GLYMA_05G170800.
DR KEGG; gmx:100784581; -.
DR eggNOG; KOG1246; Eukaryota.
DR InParanoid; K7KQR0; -.
DR OrthoDB; 1205686at2759; -.
DR Proteomes; UP000008827; Chromosome 5.
DR ExpressionAtlas; K7KQR0; baseline and differential.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR GO; GO:0048731; P:system development; IEA:UniProt.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694:SF145; DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED; 1.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 56..97
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 264..430
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 130..164
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 130..145
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1058 AA; 119213 MW; 276E0A9275D7B74D CRC64;
MKQLKLAAES HAKEDNPCRH KPEMENTLES SGSPRHRKIS ARWDPDEACQ PIVDEAPVFY
PTIEEFEDTL GYIAKIRPQA EPYGICRIVP PACWVPPCPL QEKDLWENAK FPTRIQQIDL
LQNREPMRKK IRGRKRKRRK QSKMGMGMRT AKSGSEANVA SEPEEKFGFQ SGSDFTLKDF
QQYANVFKDC YFGLNDANEY EKVSDSSHQQ RWKPSVEEIE GEYWRIIEQP TDEVEVYYGA
DLETGSLGSG FPKTSSLTKN ESDRYALSGW NLNNFPRLPG SALCFEGSDI SGVVVPWLYV
GMCFSSFCWH VEDHHLYSLN YLHWGDPKVW YGVAGSHAPG LEDAMRKHLP DLFEEQPNLL
NELVTQLSPS ILKSEGVPVH RTIQHSGEFV VTFPRAYHCG FNCGFNCAEA VNVAPVDWLV
HGQNAAELYS LQCRKTSLSH DKLLFGCAQE AMHALAELTL HGKENLKYIK WRSACGKDGV
LTKAVKTRIT MEKERLDCLP THLKMLRMDS KFDLFEEREC FSCFYDLHLS AIGCKCSPDC
YSCLKHSNLF CSCEMDNRFI LFRYTMNELS TLVEALEGES HAIEVWANRN SGMVSANAED
ACIYKQDVES AICQTQSYKE GKNSTCAGTN DKSNSTILSS SYSHISAELV HSEFHHETFS
APYGTKDCHK DNLNEKDLVM DNKVMVEKGG SVDLNIDVMS GEPENYFLHA ADYHHNKGVP
YVEKVSFAEA RKEQDNMEPG ADCIAAKEFS SCSRDVQNSC TLDGYKLFGV DLQMHSDSGE
QLNSVSKIGD AETSNTSISL TNQSFLMQKF GISVEPVNLG SVICGKLWCS KHAIYPKGFK
SRVKFFSILD PPRICNYLSE VYDAGFLGPI FKVTMEELPN EAFTNTSADK CWESVLDRLN
HEIKRQRSQG EIELPSLELL QSINGHKMFG FLSPSIIQAI EAEDPNHQCV EYWNHKEVVS
ESSGSAIDDC KFSHGSSNSL GDAKTKLFDA GLIRQEQDSI IGSYDSFEEM KLVLQGFLKK
ASSDELSAMH KLFSSDAQFT KCRAEFVSLI EEIQKACA
//
