ID K7M1Q8_SOYBN Unreviewed; 948 AA.
AC K7M1Q8;
DT 09-JAN-2013, integrated into UniProtKB/TrEMBL.
DT 09-JAN-2013, sequence version 1.
DT 24-JAN-2024, entry version 64.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100799234 {ECO:0000313|EnsemblPlants:KRH21590};
GN ORFNames=GLYMA_13G247400 {ECO:0000313|EMBL:KRH21590.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EnsemblPlants:KRH21590};
RN [1] {ECO:0000313|EMBL:KRH21590.1, ECO:0000313|EnsemblPlants:KRH21590}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH21590};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH21590.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH21590}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH21590};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH21590.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH21590.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01002}.
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DR EMBL; CM000846; KRH21590.1; -; Genomic_DNA.
DR RefSeq; XP_006594637.1; XM_006594574.2.
DR AlphaFoldDB; K7M1Q8; -.
DR SMR; K7M1Q8; -.
DR PaxDb; 3847-GLYMA13G32110-2; -.
DR EnsemblPlants; KRH21590; KRH21590; GLYMA_13G247400.
DR GeneID; 100799234; -.
DR Gramene; KRH21590; KRH21590; GLYMA_13G247400.
DR KEGG; gmx:100799234; -.
DR eggNOG; KOG1356; Eukaryota.
DR InParanoid; K7M1Q8; -.
DR OMA; DCADWFE; -.
DR OrthoDB; 3473445at2759; -.
DR Proteomes; UP000008827; Chromosome 13.
DR ExpressionAtlas; K7M1Q8; baseline.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
DR GO; GO:0031490; F:chromatin DNA binding; IBA:GO_Central.
DR GO; GO:0032454; F:histone H3K9 demethylase activity; IBA:GO_Central.
DR GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR045109; JHDM2-like.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR014977; WRC_dom.
DR InterPro; IPR001841; Znf_RING.
DR PANTHER; PTHR12549; JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; 1.
DR PANTHER; PTHR12549:SF42; PROTEIN B160; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF08879; WRC; 1.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51667; WRC; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 14..58
FT /note="WRC"
FT /evidence="ECO:0000259|PROSITE:PS51667"
FT DOMAIN 174..220
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 607..911
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 689..712
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 737..792
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 81..108
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 693..712
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 948 AA; 109073 MW; 6BA9D17B4E70851B CRC64;
MGKKSNPAEG EEAVPEHLRC SRTDGRQWRC RRRVKENLKL CEIHYVQARR RQHKKTLKLK
RKRQNDAVEA QIGAKRDRKS REALVNRRNQ LELIRMVLQR EVEKKKKKES QLNLNLNLHL
YSNHELKKEL PNGVMAIASN VASSRYFRSK NADSGSVSKL QCGRSMNKGR RKKCHWCQRS
DSWSLVMCSS CQREFFCMEC IKQRYFDTQN EVKMACPVCR GTCTCKDCLS SQYEDSESKE
YLAGKNRVDG ILHFHYLVCM LLPVLKQIKE DHHVDVEETA KTKGKRTSDI LIKPVDFVCN
EKNYCNYCKT PILDLHRSCL SCSYSLCLSC SQALSQGSTS EEINSSISNL PDKINACISS
ESHLLDDKVI SNGNLTDTST LLEWTNCNGA GIVSCPPTKL GDCGDNHLDL KYVFPLSWIK
EMEVKAEEIV CSYDFPETSD KSSSCSLCVD KDHKTSRYKQ LPEAAQREDS NDNYLFYPTI
LDISCNHFEH FRKHWGKGHP VVVRDVLQCT PNLSWDPVVM FCTYLERSMT RYENNKDLLE
ACLDWFEVEI NVSQYFIGPL KCQPQKNTWH EMLKLKGWLS SQLFKEQFPA HFAEVIDALP
IQEYMNPLSG LLNLAANLPQ GSTKHDIGPY VYISYGCADE GDDFVTNLCY DSYDMVNIMA
YSMDIPLSTD QLAKISKLLK KHKTLCQKVS SKTTSEHSED REQNGMHSIV KEGTDFLRRV
NRTSSISTEA KTISNQKLDT NISDDEECGS DSETEKAQSS LPSHRRVLST ERSPDHNPRN
PFENSNSDKG KKFTENSAAH WDVFRRQDVP KLLEYLKRHS DEFSYTSECH EKMVHPILDQ
SFFLDNTHKM RLKEEFKIEP WTFEQHVGEA VIIPSGCPYQ IRNPKCCVHV ELEFVSPENV
SECIQLIDEV RLLPEDHKAK VEKLEVKKMA LYSMSTAIKE IRELTCKT
//
