ID L0R351_9VIBR Unreviewed; 290 AA.
AC L0R351;
DT 06-MAR-2013, integrated into UniProtKB/TrEMBL.
DT 06-MAR-2013, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=Sigma factor RNA polymerase {ECO:0000313|EMBL:CCN80271.1};
DE Flags: Fragment;
GN Name=rpoD {ECO:0000313|EMBL:CCN80271.1};
OS Vibrio mediterranei.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=689 {ECO:0000313|EMBL:CCN80271.1};
RN [1] {ECO:0000313|EMBL:CCN80271.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=CAIM 944 {ECO:0000313|EMBL:CCN80271.1};
RX PubMed=24935234; DOI=10.1016/j.syapm.2014.05.005;
RA Tarazona E., Lucena T., Arahal D.R., Macian M.C., Ruvira M.A.,
RA Pujalte M.J.;
RT "Multilocus sequence analysis of putative Vibrio mediterranei strains and
RT description of Vibrio thalassae sp. nov.";
RL Syst. Appl. Microbiol. 37:320-328(2014).
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DR EMBL; HF542078; CCN80271.1; -; Genomic_DNA.
DR AlphaFoldDB; L0R351; -.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007631; RNA_pol_sigma_70_non-ess.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR Pfam; PF04546; Sigma70_ner; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
PE 4: Predicted;
FT DOMAIN 1..29
FT /note="RNA polymerase sigma-70 region 1.2"
FT /evidence="ECO:0000259|Pfam:PF00140"
FT DOMAIN 40..252
FT /note="RNA polymerase sigma factor 70 non-essential"
FT /evidence="ECO:0000259|Pfam:PF04546"
FT REGION 67..117
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 90..117
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:CCN80271.1"
FT NON_TER 290
FT /evidence="ECO:0000313|EMBL:CCN80271.1"
SQ SEQUENCE 290 AA; 33369 MW; 060BB2B52EC15FD6 CRC64;
VRMYMSEMGT VELLTREGEI DIAKRIEDGI NQVQSSVAEY PGTIPYILEQ FDKVQAEELR
LTDVITGFVD PNEEETTAPT ATHIGSELSE ADLEDEDDED VDEDDDSEEE EEDTGIDPEL
ALEKFTALRN SYQDLQLVIN EYGYDSPQVA KSHELVQEVF KEFRLTPKQF DHLVNELRTS
MDRVRTQERL IMRQAVEYGK MPKKSFIAVF TGNESSEAWL DEVLASDKPY AEKIKRYEDD
IRRSIQKLDI IEEETSLSVQ NIKDISRRMS IGEAKARRAK NEMVEANLRL
//
