ID M1D774_SOLTU Unreviewed; 230 AA.
AC M1D774;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE RecName: Full=RNA-binding protein 48 {ECO:0000256|ARBA:ARBA00015189};
GN Name=102581457 {ECO:0000313|EnsemblPlants:PGSC0003DMT400083826};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400083826, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400083826}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400083826};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- FUNCTION: As a component of the minor spliceosome, involved in the
CC splicing of U12-type introns in pre-mRNAs.
CC {ECO:0000256|ARBA:ARBA00035004}.
CC -!- SIMILARITY: Belongs to the RBM48 family.
CC {ECO:0000256|ARBA:ARBA00006938}.
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DR RefSeq; XP_006356616.1; XM_006356554.2.
DR AlphaFoldDB; M1D774; -.
DR STRING; 4113.M1D774; -.
DR PaxDb; 4113-PGSC0003DMT400083826; -.
DR EnsemblPlants; PGSC0003DMT400083826; PGSC0003DMT400083826; PGSC0003DMG400033619.
DR GeneID; 102581457; -.
DR Gramene; PGSC0003DMT400083826; PGSC0003DMT400083826; PGSC0003DMG400033619.
DR Gramene; RHC08H1G1569.2.1; RHC08H1G1569.2.1; RHC08H1G1569.2.
DR KEGG; sot:102581457; -.
DR eggNOG; ENOG502QSNB; Eukaryota.
DR InParanoid; M1D774; -.
DR OMA; NSHRQMS; -.
DR OrthoDB; 91793at2759; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR ExpressionAtlas; M1D774; baseline.
DR GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12442; RRM_RBM48; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR039599; RBM48.
DR InterPro; IPR034264; RBM48_RRM.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR20957:SF0; RNA-BINDING PROTEIN 48; 1.
DR PANTHER; PTHR20957; UNCHARACTERIZED; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 21..99
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 117..174
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 209..230
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 143..174
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 209..223
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 230 AA; 26186 MW; 9C4424A071DEB1D9 CRC64;
MPRYKDEPPA VRVYTVCDES KYLVVRNVPA LGCGDQLSQL FSTYGEIEEC KPMDAEDCEP
FTDVFWIRFC RVDNARFAKR KLDESVFLGK KLQVSYAPQF ESLHETKEKL EARRKEVLAR
LNPGRSKGSA TYRPDMIGEP SITASPAQLN STTQSIGSNH RQSSSSQGNS VHDMQCSPIT
MVSSDKEYFP SQSMNQTVKL VRDKLNKIQS SADHLEEPSK RKRVDNRRRI
//
