ID M1D9Y9_SOLTU Unreviewed; 428 AA.
AC M1D9Y9;
DT 03-APR-2013, integrated into UniProtKB/TrEMBL.
DT 03-APR-2013, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE SubName: Full=Retrotransposon gag protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400085648};
OS Solanum tuberosum (Potato).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX NCBI_TaxID=4113 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085648, ECO:0000313|Proteomes:UP000011115};
RN [1] {ECO:0000313|Proteomes:UP000011115}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DM1-3 516 R44 {ECO:0000313|Proteomes:UP000011115};
RX PubMed=21743474; DOI=10.1038/nature10158;
RG The Potato Genome Sequencing Consortium;
RT "Genome sequence and analysis of the tuber crop potato.";
RL Nature 475:189-195(2011).
RN [2] {ECO:0000313|EnsemblPlants:PGSC0003DMT400085648}
RP IDENTIFICATION.
RC STRAIN=DM1-3 516 R44 {ECO:0000313|EnsemblPlants:PGSC0003DMT400085648};
RG EnsemblPlants;
RL Submitted (JUN-2015) to UniProtKB.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR AlphaFoldDB; M1D9Y9; -.
DR PaxDb; 4113-PGSC0003DMT400085648; -.
DR EnsemblPlants; PGSC0003DMT400085648; PGSC0003DMT400085648; PGSC0003DMG400035219.
DR Gramene; PGSC0003DMT400085648; PGSC0003DMT400085648; PGSC0003DMG400035219.
DR HOGENOM; CLU_641589_0_0_1; -.
DR InParanoid; M1D9Y9; -.
DR Proteomes; UP000011115; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR032567; LDOC1-rel.
DR InterPro; IPR001878; Znf_CCHC.
DR PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR PANTHER; PTHR15503:SF43; REVERSE TRANSCRIPTASE RNASE H-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF08284; RVP_2; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000011115};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 88..103
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 1..71
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 404..428
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..29
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 38..63
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 405..428
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 428 AA; 46787 MW; 60B716B2C6408EF7 CRC64;
MTNTLGNESG QPKSNVNRSS FQPKQKGPDP SSVTAPAPKK KSEYNSKNSR AKPAYSQGSM
AQGGSKPPAC AKCGRNHSGM CRDGSTGCFK CGQNSHFMRE CPKNKQGNGN GGNRILYSSV
APPNRAASRG AISGAGGGGN RLYAITSHQE QEDSPDVITG MIQVFNFNVY ALLDPGASLS
FVTQYVSMNF NVLPEQLSVP FSISTPAVMP VGLHLIIMQT QVIMISIQSL ADAVEHSEII
MPPGSIVRGR PDRHNVEEQE LPNAPEEQPQ GEFTNAKFRE AIRMLSEAVT NQVGQQREAR
QEGADTSRIR EFLRMNPPSF TGSSTTEDLK NFIKELKKDS LSVHEYGLKF TQLSRYSPAM
VANMRSRMSL FVVGLYHLSS KEGSAAMLIG DMDISRLMIY VQQVQEEKPR DKEESRNKKA
KTGNESGK
//
