ID M3IZZ4_CANMX Unreviewed; 1498 AA.
AC M3IZZ4;
DT 01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 01-MAY-2013, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE SubName: Full=Pol {ECO:0000313|EMBL:EMG45183.1};
DE Flags: Fragment;
GN ORFNames=G210_5239 {ECO:0000313|EMBL:EMG45183.1};
OS Candida maltosa (strain Xu316) (Yeast).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida.
OX NCBI_TaxID=1245528 {ECO:0000313|EMBL:EMG45183.1, ECO:0000313|Proteomes:UP000011777};
RN [1] {ECO:0000313|EMBL:EMG45183.1, ECO:0000313|Proteomes:UP000011777}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Xu316 {ECO:0000313|Proteomes:UP000011777};
RA Yu J., Wang Q., Geng X., Bao W., He P., Cai J.;
RT "Genome sequence of Candida maltosa Xu316, a potential industrial strain
RT for xylitol and ethanol production.";
RL Submitted (FEB-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Integrase (IN) targets the VLP to the nucleus, where a
CC subparticle preintegration complex (PIC) containing at least integrase
CC and the newly synthesized dsDNA copy of the retrotransposon must
CC transit the nuclear membrane. Once in the nucleus, integrase performs
CC the integration of the dsDNA into the host genome.
CC {ECO:0000256|ARBA:ARBA00025615}.
CC -!- FUNCTION: Reverse transcriptase/ribonuclease H (RT) is a
CC multifunctional enzyme that catalyzes the conversion of the retro-
CC elements RNA genome into dsDNA within the VLP. The enzyme displays a
CC DNA polymerase activity that can copy either DNA or RNA templates, and
CC a ribonuclease H (RNase H) activity that cleaves the RNA strand of RNA-
CC DNA heteroduplexes during plus-strand synthesis and hydrolyzes RNA
CC primers. The conversion leads to a linear dsDNA copy of the
CC retrotransposon that includes long terminal repeats (LTRs) at both
CC ends. {ECO:0000256|ARBA:ARBA00025590}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Endonucleolytic cleavage to 5'-phosphomonoester.; EC=3.1.26.4;
CC Evidence={ECO:0000256|ARBA:ARBA00000077};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EMG45183.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AOGT01002940; EMG45183.1; -; Genomic_DNA.
DR STRING; 1245528.M3IZZ4; -.
DR eggNOG; KOG0017; Eukaryota.
DR HOGENOM; CLU_238940_0_0_1; -.
DR OrthoDB; 1997758at2759; -.
DR Proteomes; UP000011777; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:UniProtKB-EC.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000011777};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT DOMAIN 678..854
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 1241..1414
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 390..469
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 85..155
FT /evidence="ECO:0000256|SAM:Coils"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:EMG45183.1"
SQ SEQUENCE 1498 AA; 170944 MW; A701FA5B24C14497 CRC64;
MPPNKNNPKT EPTTGNQSNP DEFRANVLQA FEHPSMVEYL TRIIQQAIRP AIQEAEADTV
NYVASVEEQS KQEILDDVHQ ITQDIANKEM NLESREKALE AKEEELEAKT ATLEQVEKQF
QQETMQFAAS KNAEMAQMQE QIAVLTQQLN DVQATQANQP NQVVTVQRPV RLERDVNFLI
KTYMPSFIIL PEKAPQLAAG VINQSPRYVP ELIINGSDDL GKLSKLSSLE RHFSGTNVPY
IRWGELIAPY LNFDLKTAYL NAERVRPGGG KLTWREVVEL IAASGNLVLE DMAKIERFCN
LQPKPDQLVK DYLNEAEARS QDFSNFSNKH ILVRSRVYHC LGTYFRHIIQ SYDLILCNKL
EDFFKELHSI FSNLRFPSVL SGDQSAVNVS QIGSQSTGPP VRNQFQYRSS NNNSSFNQNS
NNFNRWNSSN PPSNNTNYNN GNNNYHNGNN NYHNGNSNYN NGNNNNRFKG NQWRRRKIFR
NFSKNGRVTR RINVIRFEND DGDEFEFAED CLEQFPDAKI DQLQHSITAT TASNIQHSIH
QSAEVLLPPP FSIPISFLIL PHLQQIIIGK PTLRTWNYAL SDDTETITIN NQVIEIESVA
TVPFNSIKLD LESLRQKLRD EIFHQYTELF DTTPRSAAQR IFQYDLITTS EVPIRCRAYP
AGPEEKKAIE AFITEKLKAG VLVENVKDPW YCPIFAVRQK DLYRIVNDLR KLNAVTVLDV
AYLSTFKDLM VMLAKSRYYT VFDLKSAFHQ IGLTPRSIQK MGIISHLGIH NFTSLPFGAK
CAPYILAKFL QGIFGSMENL FIYMDDILIM TSTLESHIQL VHKVCHLLNS NHLQANIKKV
QLLQEQITFL GYQISHDKIQ PTADKLKAIQ SWSLPETTTE IRSFVNFVNY FHLLIPNVSR
LTSKLTALTA GEGKRIPINH TEESRAAFET LKHQLINIPY VHHYDPSQPV HILVDTSDQA
VGAIITQQRM VDGQDILVPI CYVSYSLNEV QRRYSSMEKE SLGMLIVIRK YEYLLGTQAN
IYSDHQSLSI LQSRTVKPPL RISRFLDVLG CYSPLVYYLP GKNNFLADIL SRHQTKNIND
QVDEASLLGD EVVPIENIRS SSINSIALDN LNESNLQQIK DHLMSIPPPV VNHVNEDPDD
ESPIVNEFSD TLPVSYFAVL EDRLFVTLNN NKVVPVVSRE EFLDEATKIH QSFHASIRVI
NYIAIQKIWH PDHLLLCTEV VRNCNTCTIH GSFREIAREL VSLEPTTAFH RWAFDYTHAG
AESHGYRNIL VAVEYVTSLT YAIAVKNADT KSFLSLLTLI IQAHDVPKQI ITDNGSPFVS
EDAKKFLQEW KITPTTASNY HPMSNGKVEK TNHLLKNIIK GLTNKTWQDW YTLLPKAVNI
LNNTPSMFGK SPYFLAYGKD ATINSPIEIH DLEDISVIPT IASSDTSEES VNQLNMIQDD
VNLRLHDLDL LMQDREEHNN LKKRRDAMRN LLLEPYGTPA VYSKGQWVYR QKTEKKET
//
