ID M5W7P8_PRUPE Unreviewed; 1724 AA.
AC M5W7P8;
DT 29-MAY-2013, integrated into UniProtKB/TrEMBL.
DT 29-MAY-2013, sequence version 1.
DT 24-JAN-2024, entry version 66.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=PRUPE_6G193800 {ECO:0000313|EMBL:ONI02373.1};
OS Prunus persica (Peach) (Amygdalus persica).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=3760 {ECO:0000313|EMBL:ONI02373.1, ECO:0000313|Proteomes:UP000006882};
RN [1] {ECO:0000313|EMBL:ONI02373.1, ECO:0000313|Proteomes:UP000006882}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882};
RX PubMed=23525075; DOI=10.1038/ng.2586;
RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F.,
RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A.,
RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V.,
RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., Dondini L.,
RA Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., Aramini V., Copetti D.,
RA Gonzalez S., Horner D.S., Falchi R., Lucas S., Mica E., Maldonado J.,
RA Lazzari B., Bielenberg D., Pirona R., Miculan M., Barakat A., Testolin R.,
RA Stella A., Tartarini S., Tonutti P., Arus P., Orellana A., Wells C.,
RA Main D., Vizzotto G., Silva H., Salamini F., Schmutz J., Morgante M.,
RA Rokhsar D.S.;
RT "The high-quality draft genome of peach (Prunus persica) identifies unique
RT patterns of genetic diversity, domestication and genome evolution.";
RL Nat. Genet. 45:487-494(2013).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
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DR EMBL; CM007656; ONI02373.1; -; Genomic_DNA.
DR RefSeq; XP_007208142.1; XM_007208080.1.
DR SMR; M5W7P8; -.
DR STRING; 3760.M5W7P8; -.
DR EnsemblPlants; ONI02373; ONI02373; PRUPE_6G193800.
DR GeneID; 18772014; -.
DR Gramene; ONI02373; ONI02373; PRUPE_6G193800.
DR KEGG; pper:18772014; -.
DR eggNOG; KOG0922; Eukaryota.
DR eggNOG; KOG1812; Eukaryota.
DR HOGENOM; CLU_001832_9_0_1; -.
DR OMA; HDGFPLC; -.
DR OrthoDB; 443445at2759; -.
DR Proteomes; UP000006882; Chromosome g6.
DR GO; GO:0071013; C:catalytic step 2 spliceosome; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IBA:GO_Central.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0000390; P:spliceosomal complex disassembly; IBA:GO_Central.
DR CDD; cd20335; BRcat_RBR; 1.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd22585; Rcat_RBR_DEAH12-like; 1.
DR CDD; cd00590; RRM_SF; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1750; -; 1.
DR Gene3D; 1.10.10.2130; DEAH helicase family, winged-helix domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR042035; DEAH_win-hel_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR002867; IBR_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR044066; TRIAD_supradom.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF81; ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF01485; IBR; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00647; IBR; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF57850; RING/U-box; 3.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51873; TRIAD; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006882};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
SQ SEQUENCE 1724 AA; 194659 MW; F7C8ED3D0B888347 CRC64;
MRSSCGPYPR ATFRQPQPPE IPHRYPPRQP NYRPDGCCRR PPPRPPSFIV VLLSDQRNRR
TADIDAVIAK CKFKPENVEF SPSNVIVVSL FYTQWVHALE AIVCLWESRL DRVHNLTPKL
NRFVSVPSDL EELQDRLRGL FTERIKKLID GEAVKKWEEK RAQLSKEFDR VSKLLLRPSP
VWTLDDLAQK KRRSKCEMEL VESKIREFKS AMNCLLAYLD GNELEGCGEE GVQVFKFSRE
VYDWGRIQSI MARECHRLEE GLPIYAYRQQ ILQQILTQQV LVLIGETGSG KSTQLVQFLA
DSGIAAEQSI VCTQPRKIAA TSLAERVTQE SSGCYREKSI KFNPTFLSGQ ELNSKVIFMT
DHCLLQHYMN DMNMSGISCI IIDEAHERSL NTDLLLALIK GLLGRRPSLR LVIMSATADA
EVLSNYYYGC GIFSVVGRSF PVDVRYKPSF SEGTSSDATS YVSDVLRVAT EVHKKEKEGT
ILAFLTSQME VEWACQKFIA PGAIALPLHG KQTFEDQYNV FQSYPGRRKI IFATNLAETS
LTIPGVKYVI DSGMAKESKF EPASGMNVLR VCRISRSSAN QRSGRAGRTE PGICYRLYSK
NDFEAMPPCQ EPEIRRVHLG VAVLKILALG IKNLKDFEFI DAPCSEAIDM AMRNLIQLGA
VKQTDDVFEL TKDGRFLVKL GVEPRLGKLI LGCYNHSLRR EGLVLAAVMA NSSSIFCRVG
NDEEKLRSDC LKVQFCHRDG DLFTLLSVYK TWDNLAQEKK NTWCWENSIN AKTMRRCQEM
VKDLESCLKH ELNMIIPSTW CWNPHESNDC DKYLKKVILS SLVENVAMFS GHDQLGYEVA
LSGQHVRLHP SCSLLVFGEK PSWVVFGELL SISNQYLVCV TSIDFNTLST LCPPPLFDVS
KMESQKLQLK VLTGFGSTLL KRFCGKGNCY LLHLVSRVRS ICKDERINIK VDYYQNEITL
FATLHDRDRV SSFVYDALEC ERKWMRNECL EKCLYHGSGV LPSIALFGAG AEIKHLELQK
RCLTVDVVHS KLDSMDDKEL LSELEKYASG SICAIHKFTG TGQESVDKGK SARITFLSPD
VAQKAVELNE SEFSGSILKV IPSQVGGDRK MLSFPAVRAK VYWPRRLSRG IAIVKCDVDD
VAYMVNDFFN LLVGGRIVRC ETSKRYKDSV VISGLEKDLS EAEILDVLRT ATSRRILDFF
LLRGDAVENP PCGACEDALL KEISTFMPKR YSHNSCSIQV FEPEQKNAFM RALITFDGRL
HLEAAKALEQ LEGKVLPGFL SWQKMKCQQL FHSSLSCPAP VYPVIKKQLD SLLSSFVQLN
GVEWSLDRNA NGSYRVKISA NATKTVADLR RRVEELVKGK TIDHASLTPT ILQLLFSRDG
IALMHSLQRE TGTYILFDRR NVSVQVFGSS DQVGVVQQKL VDSLLTLHEN KLIEIRLQGS
ALPPELMKEV INRFGADLHG LKEKVPGADF SLNVRRQVIS IHGNKDLKQK VEDNIYEIAQ
MTGSSTERFN SEADCPICLC EIEDEYRLAV CGHLFCRLCL VEQCESAIKN QDSFPMCCAH
EGCRSLIVFS DLRYLLSSEK LEELFRASLG SFIASSGGNY RFCPSPDCSS VYQVAAPGTD
GEPFVCGACY AETCTRCHLE YHPYLSCEQY REFKEDPDSS LKEWCKGKEH VKSCPVCRYT
IEKIDGCNHI ECRCGKHICW VCLASYGTSN ECYDHLRSVH MAII
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