ID N9V6E6_CLOIN Unreviewed; 288 AA.
AC N9V6E6;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 49.
DE RecName: Full=HTH araC/xylS-type domain-containing protein {ECO:0000259|PROSITE:PS01124};
GN ORFNames=HMPREF1094_02466 {ECO:0000313|EMBL:ENY85999.1};
OS [Clostridium] innocuum 2959.
OC Bacteria; Bacillota; Erysipelotrichia; Erysipelotrichales;
OC Coprobacillaceae; Thomasclavelia.
OX NCBI_TaxID=999413 {ECO:0000313|EMBL:ENY85999.1, ECO:0000313|Proteomes:UP000013051};
RN [1] {ECO:0000313|EMBL:ENY85999.1, ECO:0000313|Proteomes:UP000013051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2959 {ECO:0000313|EMBL:ENY85999.1,
RC ECO:0000313|Proteomes:UP000013051};
RG The Broad Institute Genome Sequencing Platform;
RA Earl A., Ward D., Feldgarden M., Gevers D., Courvalin P., Lambert T.,
RA Walker B., Young S.K., Zeng Q., Gargeya S., Fitzgerald M., Haas B.,
RA Abouelleil A., Alvarado L., Arachchi H.M., Berlin A.M., Chapman S.B.,
RA Dewar J., Goldberg J., Griggs A., Gujja S., Hansen M., Howarth C.,
RA Imamovic A., Larimer J., McCowan C., Murphy C., Neiman D., Pearson M.,
RA Priest M., Roberts A., Saif S., Shea T., Sisk P., Sykes S., Wortman J.,
RA Nusbaum C., Birren B.;
RT "The Genome Sequence of Clostridium innocuum 2959.";
RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ENY85999.1}.
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DR EMBL; AGYV01000005; ENY85999.1; -; Genomic_DNA.
DR AlphaFoldDB; N9V6E6; -.
DR PATRIC; fig|999413.4.peg.2590; -.
DR eggNOG; COG0662; Bacteria.
DR eggNOG; COG2207; Bacteria.
DR HOGENOM; CLU_000445_88_6_9; -.
DR Proteomes; UP000013051; Unassembled WGS sequence.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR InterPro; IPR003313; AraC-bd.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR037923; HTH-like.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR018062; HTH_AraC-typ_CS.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR PANTHER; PTHR43280; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR43280:SF6; RCS-SPECIFIC HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RCLR; 1.
DR Pfam; PF02311; AraC_binding; 1.
DR Pfam; PF12833; HTH_18; 1.
DR PRINTS; PR00032; HTHARAC.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR SUPFAM; SSF51215; Regulatory protein AraC; 1.
DR PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000013051};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 178..276
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 288 AA; 33682 MW; 1AA6131E2BB945BC CRC64;
MMSIQRYQLK NRKLDKMSFH LLYISTSRYE GDWHSTPHAH HCTELFYVSS GKGSFLVNDD
VFDVKADDLI IVNPNVPHTE MSRDESPLEY IVLGIEGLQF TSFTNHMEYE DYSVHNYYEF
KHEILFYLKT LVQEMAQQDD DYEAVCQNLL EVLIINMVRR TKANLIVAPS QKITKECHFV
EQYINNHYQE DITLELLSEK TYMNKFYLVH AFKQYKGVSP INYLIRLRVQ QAKELLETTN
YSIAQISDSC GFSSQSYFSQ VFKKACGMTP NAYRKSSDRG KVIANDIT
//
