ID PP297_ARATH Reviewed; 768 AA.
AC Q9SV26;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 27-MAR-2024, entry version 127.
DE RecName: Full=Pentatricopeptide repeat-containing protein At4g01030, mitochondrial;
DE Flags: Precursor;
GN Name=PCMP-H65; OrderedLocusNames=At4g01030; ORFNames=F3I3.50;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP GENE FAMILY.
RX PubMed=10809006; DOI=10.1023/a:1006352315928;
RA Aubourg S., Boudet N., Kreis M., Lecharny A.;
RT "In Arabidopsis thaliana, 1% of the genome codes for a novel protein family
RT unique to plants.";
RL Plant Mol. Biol. 42:603-613(2000).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB45786.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB80912.1; Type=Frameshift; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
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DR EMBL; AL080237; CAB45786.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL161491; CAB80912.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002687; AEE81970.1; -; Genomic_DNA.
DR PIR; T10543; T10543.
DR RefSeq; NP_192012.2; NM_116333.3.
DR AlphaFoldDB; Q9SV26; -.
DR SMR; Q9SV26; -.
DR STRING; 3702.Q9SV26; -.
DR PaxDb; 3702-AT4G01030-1; -.
DR ProteomicsDB; 249204; -.
DR EnsemblPlants; AT4G01030.1; AT4G01030.1; AT4G01030.
DR GeneID; 827926; -.
DR Gramene; AT4G01030.1; AT4G01030.1; AT4G01030.
DR KEGG; ath:AT4G01030; -.
DR Araport; AT4G01030; -.
DR TAIR; AT4G01030; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; Q9SV26; -.
DR OMA; HNGEYED; -.
DR OrthoDB; 371097at2759; -.
DR PhylomeDB; Q9SV26; -.
DR PRO; PR:Q9SV26; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SV26; baseline and differential.
DR Genevisible; Q9SV26; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 8.
DR PANTHER; PTHR24015:SF1672; OS06G0506100 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 2.
DR PROSITE; PS51375; PPR; 15.
PE 3: Inferred from homology;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..25
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 26..768
FT /note="Pentatricopeptide repeat-containing protein
FT At4g01030, mitochondrial"
FT /id="PRO_0000363415"
FT REPEAT 22..52
FT /note="PPR 1"
FT REPEAT 53..87
FT /note="PPR 2"
FT REPEAT 88..122
FT /note="PPR 3"
FT REPEAT 123..153
FT /note="PPR 4"
FT REPEAT 154..188
FT /note="PPR 5"
FT REPEAT 189..223
FT /note="PPR 6"
FT REPEAT 224..254
FT /note="PPR 7"
FT REPEAT 259..289
FT /note="PPR 8"
FT REPEAT 290..324
FT /note="PPR 9"
FT REPEAT 325..359
FT /note="PPR 10"
FT REPEAT 360..394
FT /note="PPR 11"
FT REPEAT 395..429
FT /note="PPR 12"
FT REPEAT 430..460
FT /note="PPR 13"
FT REPEAT 461..495
FT /note="PPR 14"
FT REPEAT 496..526
FT /note="PPR 15"
FT REPEAT 532..562
FT /note="PPR 16"
FT REGION 567..642
FT /note="Type E motif"
FT REGION 643..673
FT /note="Type E(+) motif"
FT REGION 674..768
FT /note="Type DYW motif"
SQ SEQUENCE 768 AA; 86330 MW; A1E343B62BB2B2F0 CRC64;
MYRFLGLTIH GGLIKRGLDN SDTRVVSASM GFYGRCVSLG FANKLFDEMP KRDDLAWNEI
VMVNLRSGNW EKAVELFREM QFSGAKAYDS TMVKLLQVCS NKEGFAEGRQ IHGYVLRLGL
ESNVSMCNSL IVMYSRNGKL ELSRKVFNSM KDRNLSSWNS ILSSYTKLGY VDDAIGLLDE
MEICGLKPDI VTWNSLLSGY ASKGLSKDAI AVLKRMQIAG LKPSTSSISS LLQAVAEPGH
LKLGKAIHGY ILRNQLWYDV YVETTLIDMY IKTGYLPYAR MVFDMMDAKN IVAWNSLVSG
LSYACLLKDA EALMIRMEKE GIKPDAITWN SLASGYATLG KPEKALDVIG KMKEKGVAPN
VVSWTAIFSG CSKNGNFRNA LKVFIKMQEE GVGPNAATMS TLLKILGCLS LLHSGKEVHG
FCLRKNLICD AYVATALVDM YGKSGDLQSA IEIFWGIKNK SLASWNCMLM GYAMFGRGEE
GIAAFSVMLE AGMEPDAITF TSVLSVCKNS GLVQEGWKYF DLMRSRYGII PTIEHCSCMV
DLLGRSGYLD EAWDFIQTMS LKPDATIWGA FLSSCKIHRD LELAEIAWKR LQVLEPHNSA
NYMMMINLYS NLNRWEDVER IRNLMRNNRV RVQDLWSWIQ IDQTVHIFYA EGKTHPDEGD
IYFELYKLVS EMKKSGYVPD TSCIHQDISD SEKEKLLMGH TEKLAMTYGL IKKKGLAPIR
VVKNTNICSD SHTVAKYMSV LRNREIVLQE GARVHHFRDG KCSCNDSW
//
