ID PP391_ARATH Reviewed; 459 AA.
AC Q94JX6;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 27-MAR-2024, entry version 112.
DE RecName: Full=Pentatricopeptide repeat-containing protein At5g18390, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g18390; ORFNames=F20L16_110;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 274-459.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M.,
RA Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B.,
RA Taconnat L., Small I.;
RT "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT reveals their essential role in organelle biogenesis.";
RL Plant Cell 16:2089-2103(2004).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Pentatricopeptide repeat proteins;
CC URL="https://ppr.plantenergy.uwa.edu.au";
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC051626; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED92549.1; -; Genomic_DNA.
DR EMBL; AF370559; AAK48986.1; -; mRNA.
DR EMBL; BT002595; AAO00955.1; -; mRNA.
DR RefSeq; NP_197340.1; NM_121844.2.
DR AlphaFoldDB; Q94JX6; -.
DR SMR; Q94JX6; -.
DR PaxDb; 3702-AT5G18390-1; -.
DR ProteomicsDB; 249272; -.
DR EnsemblPlants; AT5G18390.1; AT5G18390.1; AT5G18390.
DR GeneID; 831957; -.
DR Gramene; AT5G18390.1; AT5G18390.1; AT5G18390.
DR KEGG; ath:AT5G18390; -.
DR Araport; AT5G18390; -.
DR TAIR; AT5G18390; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; Q94JX6; -.
DR OMA; LVNAWCS; -.
DR OrthoDB; 647768at2759; -.
DR PhylomeDB; Q94JX6; -.
DR PRO; PR:Q94JX6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q94JX6; baseline and differential.
DR Genevisible; Q94JX6; AT.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR46128; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1; 1.
DR PANTHER; PTHR46128:SF366; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR DMR1; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 9.
PE 2: Evidence at transcript level;
KW Mitochondrion; Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..7
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 8..459
FT /note="Pentatricopeptide repeat-containing protein
FT At5g18390, mitochondrial"
FT /id="PRO_0000363528"
FT REPEAT 110..144
FT /note="PPR 1"
FT REPEAT 145..175
FT /note="PPR 2"
FT REPEAT 181..215
FT /note="PPR 3"
FT REPEAT 216..250
FT /note="PPR 4"
FT REPEAT 251..285
FT /note="PPR 5"
FT REPEAT 286..320
FT /note="PPR 6"
FT REPEAT 321..355
FT /note="PPR 7"
FT REPEAT 356..390
FT /note="PPR 8"
FT REPEAT 391..425
FT /note="PPR 9"
SQ SEQUENCE 459 AA; 51770 MW; 9E6FA507C1DE7F3F CRC64;
MLLLRRYSGG SLYSILPIRA SIESTIRHFN SLEPLQSSDS TPTKGDYFAA INHVVNIVRR
EIHPERSLNS LRLPVTSEFV FRVLRATSRS SNDSLRFFNW ARSNPSYTPT SMEYEELAKS
LASHKKYESM WKILKQMKDL SLDISGETLC FIIEQYGKNG HVDQAVELFN GVPKTLGCQQ
TVDVYNSLLH ALCDVKMFHG AYALIRRMIR KGLKPDKRTY AILVNGWCSA GKMKEAQEFL
DEMSRRGFNP PARGRDLLIE GLLNAGYLES AKEMVSKMTK GGFVPDIQTF NILIEAISKS
GEVEFCIEMY YTACKLGLCV DIDTYKTLIP AVSKIGKIDE AFRLLNNCVE DGHKPFPSLY
APIIKGMCRN GMFDDAFSFF SDMKVKAHPP NRPVYTMLIT MCGRGGKFVD AANYLVEMTE
MGLVPISRCF DMVTDGLKNG GKHDLAMRIE QLEVQLRGV
//
