ID Q01MJ9_ORYSA Unreviewed; 793 AA.
AC Q01MJ9;
DT 14-NOV-2006, integrated into UniProtKB/TrEMBL.
DT 14-NOV-2006, sequence version 1.
DT 27-MAR-2024, entry version 65.
DE SubName: Full=OSIGBa0093M15.6 protein {ECO:0000313|EMBL:CAH66016.1};
GN Name=OSIGBa0093M15.6 {ECO:0000313|EMBL:CAH66016.1};
OS Oryza sativa (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=4530 {ECO:0000313|EMBL:CAH66016.1};
RN [1] {ECO:0000313|EMBL:CAH66016.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2] {ECO:0000313|EMBL:CAH66016.1}
RP NUCLEOTIDE SEQUENCE.
RA Han B.;
RT "Chromosome-wide comparison between domesticated rice subspecies indica and
RT japonica.";
RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CR855040; CAH66016.1; -; Genomic_DNA.
DR AlphaFoldDB; Q01MJ9; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR PANTHER; PTHR45835:SF87; RNA-DIRECTED DNA POLYMERASE; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
FT DOMAIN 1..82
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 495..587
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 793 AA; 91337 MW; 688E0336D520BF53 CRC64;
MSFGLTNAPA FFMKFMNKVF MEYLDKFVVV FIDDILVYSQ SEEDHQQHLR LVLGKLREHQ
LYAKLSKCEF WLSEVKFLGH VISAKGVAVD LETVTAVTDW KQPKKVTQVR SFLGLAGYYR
RFIENFSKIA RPMTQLLKKE EKFVWSPQCE KAFQTLKEKL VSSPVLILPD TRKDFMVCCD
ASHQGLGCVL MQEGHVVAYA SHQLQPYEGN YPTHDLELAA VVHALKIWRH YLIGNCCEIY
TDHKSLKYIF TQLDLNLRQR RWLELIKDYD VGIHYHPGKA NMVADALSRK SRCNTLGVRG
IPPELHQQME ALNLSIVGRG FLATLEAKPT LLDQIREAQK NDPDMHGILK NMKQGKAAGF
TEDEHGTLWN GNRVCVPDDK ELKQLILQEA HESPYSIHPA STKMYLDLKG KYWWVSMKRE
IAEFVALCDV CQRVKAEHQR SAGLLQPLQV PEWKWDEIGM DFITGLPKTQ GGYDSIWVVV
DRLTKVARFI PVKTTYGGNK LVELYFARIK KLQEELGTRL NFSTAYHPQT DGQTERLNQI
LEDMLHACVL DFGKTLDKSL PYAEFSCNNS YQASIQMAPY EALYGRKCRT PLLWDQVGES
QVFGTDILRE AEAKVRTIRE NLKVAQSRQK SYADNRRRDL EFAVDDFVYL RVTPLRGVHR
FQMKAKLAPR FVGPFRIITR RGEVAYQLEL PASLGNVHDV FHASQLKKCL RVPSEQADSE
QIEVREDLTY VESPVKILDA MERRTRNRVI CFCKVQWSNH AEEEATWERE EELKAAHPDL
FASSSESRGR DSV
//
