ID Q10FR2_ORYSJ Unreviewed; 1202 AA.
AC Q10FR2;
DT 22-AUG-2006, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABF97995.1};
GN OrderedLocusNames=LOC_Os03g45670 {ECO:0000313|EMBL:ABF97995.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABF97995.1};
RN [1] {ECO:0000313|EMBL:ABF97995.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG Rice Chromosome 3 Sequencing Consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S., Luo M.,
RA Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G.,
RA Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2] {ECO:0000313|EMBL:ABF97995.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000009; ABF97995.1; -; Genomic_DNA.
DR AlphaFoldDB; Q10FR2; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR041373; RT_RNaseH.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR45835:SF87; RNA-DIRECTED DNA POLYMERASE; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 344..359
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 845..1011
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 263..336
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 355..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..22
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 23..42
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 263..298
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 305..322
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1202 AA; 137410 MW; F2CEB5B77B4D817B CRC64;
MVTTRRSAAT GEGSHPEGSN HNNHGSPPPP PPLPPPPPPD TNSILTQILA QQANMMAAFL
HHIQNPPQHN APPPPPPPQH SKLAEFLRIR PPTFSSSNNP VDALDWLHAV GKKLDTVRCN
NEEKVIFAAH QLQGPASLWW DHFQATQPEG QPITWARFTA AFRRTHVPAG VMALKRREFR
ELKQGNRSVM EYLHEFNNLA RYAPEDVRED EEKQEKFLAG MDPELSVRLV SGDYPDFQRL
VDKSIRLEAK HKELESHKRR LANFRNQQGA NQRVRYTNPY PGGSSLQQQQ QQQPRSAPRP
QFVVCVPQPQ QQQSQQGTRA PRPPTPAVQP GQGRRDVQGQ QRLCFNCFEP GHFADKCPKP
RRQQGQAPPR PNNGGKDVIR GRVNHVTAED VLTTPDVIVG VVDCARRTIT LYWGPEQPVV
FFAPPTSVGS SELHQIGLSE ISIVREFGDV FPEELPGMPP KREIEFRIDL APGTTSLYKR
PYCMAANELA EVKKQLEELK EKGYIRPSTS PWGTPVIFVE KKDKTKRMYV DYRALNEVTL
KNKYPLPRID DLFDQLKGVA VDPETVTAVT DWKQPKTVTQ IRSFLGLAGY YRRFIVNFSK
IARPMTQLLK KEEKFVWSPQ CEKAFQTLKE KLVSSPVLIL PDTRKDFMVY CDASRQGLGC
VLMQEGHVVA YASRQLRPHE GNYPTHDLEL AAVVHALKIW RHYLIGNRCE IYTDHKSLKY
IFTLSDLNLR QRRWLELIKD YDVGIHYHPG KANVVADALS RKSHCNTLDV RGIPPELNQQ
MEALNLSIVG RGFLATLEAK PTLLDQIHEA QKNDPDMHGI LKNMKQGKAA GFTEDEHGTL
WNGNRVCVPD DKELKQLILQ EAHESPYSIH PGSTKMYLDL KGKYWWVARF IPVKTTYGGN
KLAELYFARI VSLHGVPKKI VSDRGSQFTS HFWKKLQEEL GTRLNFSTAY RPQTDGQTER
LNQILEDMLR ACVLDFGKTW DKSLPYAEFS YNNCYQASIQ MAPYEALYGR KCRTPLLWDQ
VRESQVFGTD ILREAEAKKS YADNRRRDLE FAVDDFVYLR VTPLRGVHRF QTKGKLAPRF
VGPFRIIARR GEVAYQLELP ASLGNVHDVF HVSQLKKCLR VPSEQADLEQ IEAREDLTYV
ERPVKILDTM ERRTRNWVIR FCKVQWSNHA EEEATWERED ELKAVHPDLF ASSSESRGRD
SV
//
