ID Q1GM49_RUEST Unreviewed; 323 AA.
AC Q1GM49;
DT 27-JUN-2006, integrated into UniProtKB/TrEMBL.
DT 27-JUN-2006, sequence version 1.
DT 27-MAR-2024, entry version 120.
DE SubName: Full=Transcriptional regulator, AraC family with amidase-like domain {ECO:0000313|EMBL:ABF62267.1};
GN OrderedLocusNames=TM1040_3293 {ECO:0000313|EMBL:ABF62267.1};
OS Ruegeria sp. (strain TM1040) (Silicibacter sp.).
OG Plasmid megaplasmid TM1040 {ECO:0000313|Proteomes:UP000000636}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=292414 {ECO:0000313|EMBL:ABF62267.1, ECO:0000313|Proteomes:UP000000636};
RN [1] {ECO:0000313|Proteomes:UP000000636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TM1040 {ECO:0000313|Proteomes:UP000000636};
RC PLASMID=megaplasmid TM1040 {ECO:0000313|Proteomes:UP000000636};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Brettin T., Bruce D., Han C., Tapia R., Goodwin L., Thompson L.S.,
RA Gilna P., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA Belas R., Moran M.A., Buchan A., Gonzalez J.M., Schell M.A., Sun F.,
RA Richardson P.;
RT "Complete sequence of megaplasmid of Silicibacter sp. TM1040.";
RL Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABF62267.1, ECO:0000313|Proteomes:UP000000636}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TM1040 {ECO:0000313|EMBL:ABF62267.1,
RC ECO:0000313|Proteomes:UP000000636};
RC PLASMID=megaplasmid TM1040 {ECO:0000313|Proteomes:UP000000636};
RX PubMed=17526795; DOI=10.1128/AEM.02580-06;
RA Moran M.A., Belas R., Schell M.A., Gonzalez J.M., Sun F., Sun S.,
RA Binder B.J., Edmonds J., Ye W., Orcutt B., Howard E.C., Meile C.,
RA Palefsky W., Goesmann A., Ren Q., Paulsen I., Ulrich L.E., Thompson L.S.,
RA Saunders E., Buchan A.;
RT "Ecological genomics of marine Roseobacters.";
RL Appl. Environ. Microbiol. 73:4559-4569(2007).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CP000376; ABF62267.1; -; Genomic_DNA.
DR RefSeq; WP_011536910.1; NC_008043.1.
DR AlphaFoldDB; Q1GM49; -.
DR KEGG; sit:TM1040_3293; -.
DR HOGENOM; CLU_000445_59_0_5; -.
DR OrthoDB; 9793400at2; -.
DR Proteomes; UP000000636; Plasmid megaplasmid TM1040.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd03136; GATase1_AraC_ArgR_like; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002818; DJ-1/PfpI.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR PANTHER; PTHR43130; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR43130:SF3; THIJ_PFPI FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14240); 1.
DR Pfam; PF01965; DJ-1_PfpI; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF52317; Class I glutamine amidotransferase-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW Plasmid {ECO:0000313|EMBL:ABF62267.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000636}.
FT DOMAIN 216..314
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 323 AA; 35510 MW; 3B90F5A8F18E0E95 CRC64;
MPPKSPPIFE FLLFEGFSNM VLASAMEPLR DVRMNSGQEV SGWRVTTLDG APVRSSSGLQ
ITPDGSFDEG ETNRTLVLVA GYHVRDQVTP TLLAKLRTAT RQAERVLALD TAAWLLAAAG
VLEGQAATIH WQELEAFSET FPKTEVSTAR FVRSGAFLTC GGASTALDMM LSLIQELYGS
AAAFGASTMF VYDPSRQSEL NRGAARLEQR GSPKVLEAVN LMAERIESPL STAELAKQVS
LSERTLARAF QRELGMTPGK YYKILRLQHA RYLSEETHLS LEQIAHRCGF SSASSLGRSF
VGLYGRTLRD TRTQERPWVK SAR
//
