ID Q1GS92_SPHAL Unreviewed; 316 AA.
AC Q1GS92;
DT 27-JUN-2006, integrated into UniProtKB/TrEMBL.
DT 27-JUN-2006, sequence version 1.
DT 27-MAR-2024, entry version 89.
DE SubName: Full=Integrase, catalytic region {ECO:0000313|EMBL:ABF53480.1};
GN OrderedLocusNames=Sala_0224 {ECO:0000313|EMBL:ABF51948.1}, Sala_1767
GN {ECO:0000313|EMBL:ABF53480.1};
OS Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256)
OS (Sphingomonas alaskensis).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingopyxis.
OX NCBI_TaxID=317655 {ECO:0000313|EMBL:ABF53480.1, ECO:0000313|Proteomes:UP000006578};
RN [1] {ECO:0000313|EMBL:ABF53480.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RB2256 {ECO:0000313|EMBL:ABF53480.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Brettin T., Bruce D., Han C., Tapia R., Munk A.C., Chertkov O., Gilna P.,
RA Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA Cavicchioli R., Robb F., Ertan H., Schut F., Ting L.M., Richardson P.;
RT "Complete sequence of chromosome of Sphingopyxis alaskensis RB2256.";
RL Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABF53480.1, ECO:0000313|Proteomes:UP000006578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 13593 / LMG 18877 / RB2256
RC {ECO:0000313|Proteomes:UP000006578}, and RB2256
RC {ECO:0000313|EMBL:ABF53480.1};
RX PubMed=19805210; DOI=10.1073/pnas.0903507106;
RA Lauro F.M., McDougald D., Thomas T., Williams T.J., Egan S., Rice S.,
RA DeMaere M.Z., Ting L., Ertan H., Johnson J., Ferriera S., Lapidus A.,
RA Anderson I., Kyrpides N., Munk A.C., Detter C., Han C.S., Brown M.V.,
RA Robb F.T., Kjelleberg S., Cavicchioli R.;
RT "The genomic basis of trophic strategy in marine bacteria.";
RL Proc. Natl. Acad. Sci. U.S.A. 106:15527-15533(2009).
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DR EMBL; CP000356; ABF51948.1; -; Genomic_DNA.
DR EMBL; CP000356; ABF53480.1; -; Genomic_DNA.
DR RefSeq; WP_011540540.1; NC_008048.1.
DR AlphaFoldDB; Q1GS92; -.
DR STRING; 317655.Sala_0224; -.
DR KEGG; sal:Sala_0224; -.
DR KEGG; sal:Sala_1767; -.
DR eggNOG; COG2801; Bacteria.
DR HOGENOM; CLU_027402_15_1_5; -.
DR OrthoDB; 9803878at2; -.
DR Proteomes; UP000006578; Chromosome.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR047656; IS481-like_transpos.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR NCBIfam; NF033577; transpos_IS481; 1.
DR PANTHER; PTHR35004:SF7; INTEGRASE PROTEIN-RELATED; 1.
DR PANTHER; PTHR35004; TRANSPOSASE RV3428C-RELATED; 1.
DR Pfam; PF13683; rve_3; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006578}.
FT DOMAIN 118..296
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 316 AA; 36595 MW; FF7FAA27893F62F8 CRC64;
MGQILHGSAK TTHAIRGELQ RSQASVASLA RKYGINEKTV LKWRHRQSVD DMPMGPKERR
STVLSPMEEA AIVALRVQAR LPLDDVYIAL KDVIPQLTRS SLHRCLQRHG ISRLPKADRE
KPKKFKDYEI GYFHIDIAEL RYEGGKAFLY VAVDRTSKLV FARIYRKATK LAAAAFLKVL
VKTVPYRIHT VLTDNGVQFV QPQRGQSRQW LIHIFERVCL ENGIEHRLTK PYHPWTNGQA
ERMVRTIKEA TVKSFHYASI QELRRHVSDW LIAYNFAKQL KALKFRTPYE AIEELWKSKP
DVFIVKPNHH MLGPNN
//
