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Database: UniProt
Entry: Q2HUK9_MEDTR
LinkDB: Q2HUK9_MEDTR
Original site: Q2HUK9_MEDTR 
ID   Q2HUK9_MEDTR            Unreviewed;       672 AA.
AC   Q2HUK9;
DT   21-MAR-2006, integrated into UniProtKB/TrEMBL.
DT   21-MAR-2006, sequence version 1.
DT   24-JAN-2024, entry version 83.
DE   SubName: Full=Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:AES80699.1};
DE   SubName: Full=Tetratricopeptide-like helical {ECO:0000313|EMBL:ABD32557.1, ECO:0000313|EMBL:RHN47346.1};
GN   Name=11429114 {ECO:0000313|EnsemblPlants:AES80699};
GN   OrderedLocusNames=MTR_7g083820 {ECO:0000313|EMBL:AES80699.1};
GN   ORFNames=MtrDRAFT_AC149131g10v2 {ECO:0000313|EMBL:ABD32557.1},
GN   MtrunA17_Chr7g0252001 {ECO:0000313|EMBL:RHN47346.1};
OS   Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX   NCBI_TaxID=3880 {ECO:0000313|EMBL:ABD32557.1};
RN   [1] {ECO:0000313|EMBL:ABD32557.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Town C.D.;
RL   Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABD32557.1}
RP   NUCLEOTIDE SEQUENCE.
RG   The International Medicago Genome Annotation Group;
RL   Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:AES80699.1, ECO:0000313|Proteomes:UP000002051}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=A17 {ECO:0000313|EMBL:AES80699.1}, and cv. Jemalong A17
RC   {ECO:0000313|EnsemblPlants:AES80699,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=22089132; DOI=10.1038/nature10625;
RA   Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA   Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA   Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA   Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA   Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA   Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA   Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA   Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA   Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA   Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA   Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA   Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA   Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA   Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA   Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA   Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA   Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA   Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA   Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA   Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA   Town C.D., Roe B.A.;
RT   "The Medicago genome provides insight into the evolution of rhizobial
RT   symbioses.";
RL   Nature 480:520-524(2011).
RN   [4] {ECO:0000313|EMBL:AES80699.1, ECO:0000313|Proteomes:UP000002051}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES80699,
RC   ECO:0000313|Proteomes:UP000002051};
RX   PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA   Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA   Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA   Schwartz D.C., Town C.D.;
RT   "An improved genome release (version Mt4.0) for the model legume Medicago
RT   truncatula.";
RL   BMC Genomics 15:312-312(2014).
RN   [5] {ECO:0000313|EnsemblPlants:AES80699}
RP   IDENTIFICATION.
RC   STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES80699};
RG   EnsemblPlants;
RL   Submitted (APR-2015) to UniProtKB.
RN   [6] {ECO:0000313|EMBL:RHN47346.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaves {ECO:0000313|EMBL:RHN47346.1};
RA   Pecrix Y., Gamas P., Carrere S.;
RT   "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL   Nat. Plants 0:0-0(2018).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; AC149131; ABD32557.1; -; Genomic_DNA.
DR   EMBL; CM001223; AES80699.1; -; Genomic_DNA.
DR   EMBL; PSQE01000007; RHN47346.1; -; Genomic_DNA.
DR   RefSeq; XP_003624481.1; XM_003624433.1.
DR   AlphaFoldDB; Q2HUK9; -.
DR   STRING; 3880.Q2HUK9; -.
DR   PaxDb; 3880-AES80699; -.
DR   EnsemblPlants; AES80699; AES80699; MTR_7g083820.
DR   GeneID; 11429114; -.
DR   Gramene; AES80699; AES80699; MTR_7g083820.
DR   KEGG; mtr:11429114; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_2_1; -.
DR   OMA; HMYHHCS; -.
DR   OrthoDB; 1209758at2759; -.
DR   Proteomes; UP000002051; Chromosome 7.
DR   Proteomes; UP000265566; Chromosome 7.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 2.
DR   Pfam; PF13812; PPR_3; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          50..84
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          120..154
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          263..297
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          334..364
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          365..399
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          580..672
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   672 AA;  75393 MW;  C22A0443E4E9E887 CRC64;
     MIPFVSRTLS SSTTINKCIR MHSTTTTKTT EWTKTANLRS MFGKYVDKTS VYSWNSIIAD
     FARSGDSLQA LYAFSSMRKL SLHPNRSTFP CTIKSCSSLY DLCAGKQIHQ QAFVFGYGSD
     IFVASALIDM YSKCGYLNDA RKLFDEIPER NVVSWTSMIS GYVQNERARE AVFLFKEFLL
     VDETDYDEIV GVGVGVDSVL LGCVISACAR VCVKSVTECV HGLAVKKGFE GCLAVGNTLM
     DAYAKCGEIS VSRKVFDGME ETDVCSWNSL IAVYAQNGLS VEAFSLFSDM VKRGEVRYNA
     VTLSAVLLAC AHSGALQIGK CIHDQVVKME LEDNLVVGTS IVDMYCKCGR VEMARKAFDR
     LKRKNVKSWT VMVAGYGMHG HGKEAMKVFY EMIRCGIKPN YITFVSVLAA CSHAGLLKEG
     WHWFNKMKCE FDVEPGIEHY SCMVDLLGRA GYLKEAYGLI QEMKVKPDFI VWGSLLGACR
     IHKNVELGEI SARKLFKLDP SNCGYYVLLS NIYADAGRWD DVERMRILMK NHGLLKTPGY
     SIVEHKGRVH VFLVGDKEHP QHEKIYEYLD ELNVKLQEVG YMPNVTSVLY DVDVEEKGMV
     LRVHSEKLAV AFGIMNSVPG SVIQIIKNLR ICGDCHFAIK LISKIVNREI VIRDSKRFHH
     FKDGLCSCGD YW
//
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