ID Q2HUK9_MEDTR Unreviewed; 672 AA.
AC Q2HUK9;
DT 21-MAR-2006, integrated into UniProtKB/TrEMBL.
DT 21-MAR-2006, sequence version 1.
DT 24-JAN-2024, entry version 83.
DE SubName: Full=Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:AES80699.1};
DE SubName: Full=Tetratricopeptide-like helical {ECO:0000313|EMBL:ABD32557.1, ECO:0000313|EMBL:RHN47346.1};
GN Name=11429114 {ECO:0000313|EnsemblPlants:AES80699};
GN OrderedLocusNames=MTR_7g083820 {ECO:0000313|EMBL:AES80699.1};
GN ORFNames=MtrDRAFT_AC149131g10v2 {ECO:0000313|EMBL:ABD32557.1},
GN MtrunA17_Chr7g0252001 {ECO:0000313|EMBL:RHN47346.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:ABD32557.1};
RN [1] {ECO:0000313|EMBL:ABD32557.1}
RP NUCLEOTIDE SEQUENCE.
RA Town C.D.;
RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABD32557.1}
RP NUCLEOTIDE SEQUENCE.
RG The International Medicago Genome Annotation Group;
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AES80699.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:AES80699.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:AES80699,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [4] {ECO:0000313|EMBL:AES80699.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES80699,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [5] {ECO:0000313|EnsemblPlants:AES80699}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:AES80699};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [6] {ECO:0000313|EMBL:RHN47346.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN47346.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; AC149131; ABD32557.1; -; Genomic_DNA.
DR EMBL; CM001223; AES80699.1; -; Genomic_DNA.
DR EMBL; PSQE01000007; RHN47346.1; -; Genomic_DNA.
DR RefSeq; XP_003624481.1; XM_003624433.1.
DR AlphaFoldDB; Q2HUK9; -.
DR STRING; 3880.Q2HUK9; -.
DR PaxDb; 3880-AES80699; -.
DR EnsemblPlants; AES80699; AES80699; MTR_7g083820.
DR GeneID; 11429114; -.
DR Gramene; AES80699; AES80699; MTR_7g083820.
DR KEGG; mtr:11429114; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR OMA; HMYHHCS; -.
DR OrthoDB; 1209758at2759; -.
DR Proteomes; UP000002051; Chromosome 7.
DR Proteomes; UP000265566; Chromosome 7.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 50..84
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 120..154
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 263..297
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 334..364
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 365..399
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 580..672
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 672 AA; 75393 MW; C22A0443E4E9E887 CRC64;
MIPFVSRTLS SSTTINKCIR MHSTTTTKTT EWTKTANLRS MFGKYVDKTS VYSWNSIIAD
FARSGDSLQA LYAFSSMRKL SLHPNRSTFP CTIKSCSSLY DLCAGKQIHQ QAFVFGYGSD
IFVASALIDM YSKCGYLNDA RKLFDEIPER NVVSWTSMIS GYVQNERARE AVFLFKEFLL
VDETDYDEIV GVGVGVDSVL LGCVISACAR VCVKSVTECV HGLAVKKGFE GCLAVGNTLM
DAYAKCGEIS VSRKVFDGME ETDVCSWNSL IAVYAQNGLS VEAFSLFSDM VKRGEVRYNA
VTLSAVLLAC AHSGALQIGK CIHDQVVKME LEDNLVVGTS IVDMYCKCGR VEMARKAFDR
LKRKNVKSWT VMVAGYGMHG HGKEAMKVFY EMIRCGIKPN YITFVSVLAA CSHAGLLKEG
WHWFNKMKCE FDVEPGIEHY SCMVDLLGRA GYLKEAYGLI QEMKVKPDFI VWGSLLGACR
IHKNVELGEI SARKLFKLDP SNCGYYVLLS NIYADAGRWD DVERMRILMK NHGLLKTPGY
SIVEHKGRVH VFLVGDKEHP QHEKIYEYLD ELNVKLQEVG YMPNVTSVLY DVDVEEKGMV
LRVHSEKLAV AFGIMNSVPG SVIQIIKNLR ICGDCHFAIK LISKIVNREI VIRDSKRFHH
FKDGLCSCGD YW
//