ID Q2QPS6_ORYSJ Unreviewed; 1678 AA.
AC Q2QPS6;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 11-JUL-2006, sequence version 2.
DT 27-MAR-2024, entry version 94.
DE RecName: Full=RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012493};
DE EC=2.7.7.49 {ECO:0000256|ARBA:ARBA00012493};
GN OrderedLocusNames=LOC_Os12g33450 {ECO:0000313|EMBL:ABA98741.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA98741.2};
RN [1] {ECO:0000313|EMBL:ABA98741.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA98741.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA98741.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000011; ABA98741.2; -; Genomic_DNA.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00024; CD_CSD; 1.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR45835:SF87; RNA-DIRECTED DNA POLYMERASE; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 543..558
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 1309..1472
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 232..254
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 459..536
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1649..1678
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 471..517
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1678 AA; 192320 MW; 769AE7D35E2DA4AF CRC64;
MSFVISLTPL IIVKDAITEW LGLYNRMPRY KPEYLFGVEG FVQELRTMSF VIGFGTAPFY
AQIPHDRHEE KCRVKVTLNS NSEEVPSVMF EAGGRNYIHA CQEVARIAIG ELRDRYSDQL
ADTEYRYHPR QPQGSDRGSY LETEGIENDV TTKHLVEMLW AMDESRAETV LAAQDREDRN
RGKICKLEDK VDRLEKELAA LKGEAPPQKA RIRLTARKRA LFVPRYQLAP KMVNTRSNGN
GPNNPNNNNN GENPTLAQVL AQQTQLINMM MQQFQNQQNQ GNNHAPPQNK LAEFLRVRPP
VFSSTTNPVE ASDWLHAIEK KLDLLQCTDQ EKVSFASHQL HGPASEWWDH FRLNRTTAEP
ITWLEFTAAF RKTHIPSGVV SLKKKEFRSL TQGSRSVTEY LHEFNRLARY APEDVRNDEE
RQEKFLGGLN DELSYPLMVG DYPDFQKLVD KAIRQEDKYN RMEQKKRRIA QFKTQQGNNQ
KPRLTLGPQS MPQGGSSSVV RPQRQFFNNN AGNNIRNQAP RPVAAPAQQQ PAKREQGNKP
VVCFNCGDPG HYADKCPKPR RVKVVPAQNN SAVPASKARV NHVAAAEAQD APDVILGTFL
VNSVPATVLF DSGATHSFLS MSFAGNHGME VEDLRRPLMV STPSNQALSL QRSPSVRIEI
QGVPFLANLI LLESKDLDVI LGMDWLARHK GVIDCANRKV TLNSYDGRVV TVHALSSESF
RSRLNQITLE EIPIVREYPD VFPDDLPGMP PKRDIEFRID LVPGTTPIHK RPYRMAANEL
AEVKRQVDDL LQKGYIRPSS SPWGAPVIFV EKKDHTQRMC VDYRALNDVT IKNKYPLPRI
DDLFDQLKGA TVFSKIDLRS GYHQLRIKEE DIPKTAFTTR YGLFECTVMS FGLTNAPAFF
MNLMNKHEEH LRLALEKLRE HQLYAKFSKC EFWLSEVKFL GHVISAGGVA VDPSNVESVT
NWKQPKTVSE IRSFLGLAGY YRRFIENFSK IAKPMTRLLQ KDVKYKWSEE CEQSFQELKS
RLISAPILIL PDPKKGFQVY CDASKLGLGC VLMQDGKVVA YASRQLRPHE KNYPTHDIEL
AAVVHALKIW RHYLFGTRTE VYTDHKSLKY IFTQPDLNMR QRRWLELIKD YDMGIHYHPG
KANVVADALS RKGYCNATEG RQLPLELCKE FERLNLGIVG KGFVAALEAK PTLIDQVREA
QINYPDIQEI KKNMRRGKAI GFLEDEHGTV WLGERICVPD NKDLKDAILK EAHDTLYSIH
PGSTKMYQDL KERFWWASMK REIAEYVAVC DVCQRVKAEH QKPAGLLQPL KIPEWKWEEI
GMDFITGLPR TSSGHDSIWV IVDRLTKVAH FIPVKTTYSG SRLAELYMAR IVCLHGVPKK
IVSDRGSQFT SNFWKKLQEE MGSKLNFSTA YHPQTDGQTE RVNQILEDML RACALDFGGS
WDKNLPYAEF SYNNSYQASL QMAPYEALYG RKCRTPLLWD QTGERQVFGT DILREAEEKV
KIIQERLRVA QSRHKSYADN RRRDLSFEEG DYVYLRVTPL RGVHRFHTKG KLAPRFVGPY
KIVSRRGEVA YQLELPQSLA GVHNVFHVSQ LKKCLRVPTE EANIEQIEVQ EDLTYVEKPI
RILETNERRT RNRVIRFCKV QWSNHSEEES TWEREDELKS AHPHLFASSS ESRGRDSV
//
