ID Q2QR10_ORYSJ Unreviewed; 1964 AA.
AC Q2QR10;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 24-JAN-2006, sequence version 1.
DT 27-MAR-2024, entry version 77.
DE SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABA98213.1};
GN OrderedLocusNames=LOC_Os12g29190 {ECO:0000313|EMBL:ABA98213.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA98213.1};
RN [1] {ECO:0000313|EMBL:ABA98213.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA98213.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA98213.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000011; ABA98213.1; -; Genomic_DNA.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50879; RNASE_H_1; 1.
PE 4: Predicted;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 1386..1515
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT DOMAIN 1672..1838
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 205..252
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 319..412
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 593..646
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 681..707
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 319..334
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 355..412
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 597..617
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 619..633
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 682..707
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1964 AA; 222815 MW; ED132B5BFC010854 CRC64;
MGPSSGIDDL VFPPGQTFRF GSLDFVTDNF GKISLLDLES DQSGENRISV PFGFPNAAET
YFKTISIESA SNHSAEIASS PTTPDQDDGA YPPVLMKLPD DLAAVSTTTA SSSRRPMRKS
VSTPISPSFR EVGVILQPLG TVSTDQLDDH YSSPTVDSRP TDIVEYDEFS SRYHDFDDFD
DFDGSLDDNY TPLYFGVFMA NNETEEQRQA RETEERRRLE EEQQAQEQER LRREQQDRER
IAKEAEDRRQ RALEAGRRAR DLIGQQDVEG TPVFRTPQQN AVAAITLLDT LLNQNELNRS
DHVVNILNQT KTMIAASVPV NSESVHTPTG SRVPHFRSQD YRHPSLSITG AGSNRRSRGH
DERSVHSPPD YRGERRVERP RSPPRRRPID LRDTIIQRRA ARGRHHSPDR YDDDLDGVAA
FTDDLRRVDW PAGFKPTGIE KYDGTTNPES WLTVYGLAIR AAGGDNKAMA NYLPVALADS
ARSWLHGLPR GTIGSWAELR DHFIANFQGT FERPGTQYDL YNVIQKSGES LREYIRRFSE
QRNKISDITD DVIIAAFTKG IRHEELVGKF GRKPPRTVKL MFEKANEYAK AEDAVTASKQ
SGPSWKPKNT PATGGGGSNN HKDRKRKPEE LVATAAHSSR QRSRVNTFDK IMNSQCPHHP
NSNHVAKECF IYKQFAEQYT KSTRKNSDEE QSTSRKKDDG DTPAGFQDHR KELNHIFGGP
MAYESKRKQK LTEREINAVQ PDTPQYLRWS EIAIRFDRSD HPDRVVHPGR YPLVLDPVVR
NVKLRRTLID GGSALNILFA KTLDDMQIPR SELKPSNAPF HGVIPGLSAT PLGQITLPVT
FGTRENFRTE NISFEVADFE TAYHAILGRP ALAKFMAVPH YTYMMMKMPG PRGVLTLRSD
IKQAVTCDKE SCDMAQTREM ASAREEIRLA ATTESALITF LQNNKDIFAW KPSDMPGIPR
EVIEHSLHVK EDAKPIKQRL RRFAQDRKDA IKEELTKLLA AGFIKEVLHP DWLANPVLVR
KKTGQWRMCV DYTDLNKSCP KDPFGLPRID QIRLKESDCL KTSFITPFGA YCYVTMPFGL
KNAGATYQRM IQRCFSTQIG RNVEAYVDDV VVKTKQKDDL ISDLEETFAS IRAFRMKLNP
EKCTFGVPSG KLLGFMVSHR GIQANPEKVT AILNMKPPST QKDVQKLTGC MAALSRFVSR
LGERGMPFFK LLKKTDNFQW GPEAQKAFED FKQLLTKPPV LASPHPQEPL LLYVSVTSQV
VSTVLVVERE EEGHVQKVQR PIYFVSEVLA DSKTRYPQVQ KLLYGILITT RKLSHYFQGH
SVTVVTSFPL GDVLHNREAN GRIAKWALEL MSLDISFKPR TSIKSQALAD FVAEWTECQE
DTPVEKIEHW TMHFDGSKRL SGTGAGVVLI SPTGERLSYV LWIHFSASHN VAEYEALLHG
LRIAISLGIK RLIVRGDSQL VVNQVMKEWS CIDDNMMAYR QEVRKLEDKF DGLELSHVLR
HNNEAADRLA NFGSKREAAP SDVFVEHLYS PTVPRKDATQ VADTHDIAMV EADWREPLIR
FLTSQELPQD KDEAERISRR SKLYVMHEAE LYKKSPSGIL QRCVSLEEGR QLLKDIHSGI
CGNHAAARTI VGKAYRQGFF WPTAVSDADK IVRTCEGCQF FARQIHLPAQ ELQTIPLSWP
FAVWGLDMVG PFKKAVGGYT HLFVAIDKFS KWIEAKPVVT ITADNARDFF INIVHRFGVP
NRIITDNGTQ FTGGVFKDFC EDFGIKICYA SVAHPMSNGQ VERANGMILQ GIKARVFDRL
KPYAGKWVSQ LPSVLWSLRT TPSRATGQSP FFLVYGAEAM LPSEVEFESL RFRNFREDRY
EEDRVDDLHR LEEVREAALI RSARYLQGLR RYHNCNVRSR AFLVGDLVLR KIQTTRDRHK
LSPLWEGPFI ISEVTRPGSY RLKREDGTLV DNSWNIEHLR RFYA
//
