ID Q2QRZ9_ORYSJ Unreviewed; 1715 AA.
AC Q2QRZ9;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 11-JUL-2006, sequence version 2.
DT 27-MAR-2024, entry version 77.
DE SubName: Full=Retrotransposon protein, putative, unclassified {ECO:0000313|EMBL:ABA97752.2};
GN OrderedLocusNames=LOC_Os12g25830 {ECO:0000313|EMBL:ABA97752.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA97752.2};
RN [1] {ECO:0000313|EMBL:ABA97752.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA97752.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA97752.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000011; ABA97752.2; -; Genomic_DNA.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 3.10.20.370; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR24559:SF437; RIBONUCLEASE H; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50879; RNASE_H_1; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 1387..1520
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT REGION 129..159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 467..535
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 597..683
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 129..147
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 474..488
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 499..526
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 597..639
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1715 AA; 195138 MW; C5B1FADAD7780955 CRC64;
MTKQSSSKAE VEPTNVIPIT LDDFEGEDRK SMEEYIKEIT HEALIRACTR TRQGVIIKPG
PRPKLTPDLV SNEEVTQSIQ QQDASAIDSS MVIFKNKLDA TIEGRFDEFL RTKFGPLMAD
FMLKDKASTS ASQAPTDQTS SRTDGAAQMA CPTGPDGRSD RDFAIGPTGQ MAEFPNLPSL
VVKIDGQHGS IETELRLCDL TSVKQKYNEP AVDYIKRIRD VRNQCYSLNI TDRDLAGLAF
NGLIAPLRER LDGQQFLDVS QLMQKALAQE SWVKDNKKFV RPYEKKPNVN FIDYPEASDS
EGKDDHDMYV AEWSWTNKNK PFVCSNLMPT PCKYRQSEVK YSFDVAKCDK IFDYLLQEKQ
IRLPKGHIVP SQEELKRRAY CKWHDSHSHS TNDCNVFRRQ VQSAIDEGRL KFIDGSKMKL
DHDPFPMNTI NFNDKKVLIR PEQAESTKGK GEVIGEPRPK MIVPKKPEVG VWKENNSEAS
TSKTPRKTKV TFDMLLGKYE KQGGEKARNK GKRPRSPPRE QFGHSPRRSE SPQYNCSQNM
SWGPYPMPPS GYTYPYYMPW GATPPMFNHM PPIQFNQGWG GPRRTIHEHL SSPNNGWFYD
EVGESSSNKP EAGTSSSQSA GLTRPSSRSD RNHTAGLTGP SGRSDCRPDD GPTDASGRSD
RPPNVDMTGV SGRSDRWSTS GLTGLQRQFD RRFAKGNAGA LSSSSKLNRG HYLPPGTELK
PRWIPKYLTA TQRRRLQRLR AQEIREQKAE EQRDRRFNEL RPPPVWRRKS IEKEEPVVVE
EKEEQSVAKD EPSTKEDMDI NMVYMLPIEF CAMDEAEVAQ FSLGPKDAVF EKPDESNCHM
KPLYLKGHID GKPLGRGDNE LKKTNMILNG FNGEPKEAKG IFSVELTMGN KTLPTAFFIV
DVQGANLEWL QKRVQEYRST KNDIGETIED FDEVEKLGQG FTSADPLEEV KIIELLKEYV
DCFAWEYHEM PGLSRELVEH RLPIKPGFSP YKQPPRRFNP LLYDRVKEEI DQLLKAGFTR
RCHYAEWVSS IVPVEKKGSG KIRVCMDFRD LNKATPKDEY PMPIADMMIN DASGHKVISF
LDGNAGNNQI FMTEQDIYKT TFRCPGFVGL FEWVVMTFGL KNAGATYQRA MNLIFHDLLG
IILEIYIDDI VVKSDGMEEH IADLRLAFER MRRYGLKMNP LKCAFGLTAG KFLGFMVHER
GVEIDPKKIE KIRDFKAPTC KKEVQKLLGK IDAFVPILRL KKEADFTWGA KQQEAFEELK
RYLSTPPVVR APKAGKPFRL YIASEDKVIG AVLTQEEDGK EYIITYFSRR LLDAETSTCI
VACQANVIKH MLQRPILSGR IGKWAYALIE YDLAYEPLKS VRGQNVCDFI VEHHVDIAYE
EEVCLVEVIP WKIYFDGSSC KEGQGIGVVL FSPNGMCYEA SVRLEYYCTN NQAKYNALLF
GLQIMEMVGA KHVEAFGDSE LVVQRVAGFY KCLDGSLNRY LDSCLDIIAN FDNFTIRHIA
RHDNSRANDL AQQASGYNVK KGLFLVLEEP VLDFKSLCEI GEIGDQGRSD RRCAAGLTGD
QVRYNRPHAA GLTGDPERSD RPLIRYLKDP TLKVDRKIRY LKDWRIPLIR YLKDPTLKAN
GQAESSNKTL LKLVKKKIEE HPKRWHEVLS EALWAHRISK HGATKVTPFE LVYCQEVVLP
IEVNLGSLRY IKQDDLLSED YKTFVKTLMM SLTSV
//
