ID   Q2QTV3_ORYSJ            Unreviewed;       938 AA.
AC   Q2QTV3;
DT   24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT   24-JAN-2006, sequence version 1.
DT   27-MAR-2024, entry version 60.
DE   RecName: Full=RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012493};
DE            EC=2.7.7.49 {ECO:0000256|ARBA:ARBA00012493};
GN   OrderedLocusNames=LOC_Os12g18400 {ECO:0000313|EMBL:ABA97439.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA97439.1};
RN   [1] {ECO:0000313|EMBL:ABA97439.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2] {ECO:0000313|EMBL:ABA97439.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:ABA97439.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R.;
RL   Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; DP000011; ABA97439.1; -; Genomic_DNA.
DR   AlphaFoldDB; Q2QTV3; -.
DR   CDD; cd00303; retropepsin_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.30.70.270; -; 1.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041373; RT_RNaseH.
DR   PANTHER; PTHR24559:SF437; RIBONUCLEASE H; 1.
DR   PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF13650; Asp_protease_2; 1.
DR   Pfam; PF17917; RT_RNaseH; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SUPFAM; SSF50630; Acid proteases; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
PE   4: Predicted;
FT   DOMAIN          518..668
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|Pfam:PF00078"
FT   DOMAIN          667..704
FT                   /note="Reverse transcriptase RNase H-like"
FT                   /evidence="ECO:0000259|Pfam:PF17917"
FT   REGION          1..75
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          199..229
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          250..276
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          760..815
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        30..66
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        201..216
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   938 AA;  105868 MW;  9166BA8628BA6276 CRC64;
     MMVPKNPVFG VWKENRSEVS TSKAPKKTKV TFDMLLEKYE KQGGERARNK GKRPRLPPRE
     RFGHSSRRSQ SPPYHHSLDM SWGPYPMPPP GYPYPYYMPW GTTPPMFNHM PPMQFNQGWG
     GPRRPIHERL SSPNNGRFYG KNRVKEEKRE GKRVKAGLTA DLISVGPAHL AGLTGAFGRS
     DRWSKSSLTG IQRRFDRRFA SSSVRASSSS NRLNRGHYLP PRTEPKPRWM PKDLMATQRR
     RLQRLRAQEI REKKAEEQRD RSPKDAVFEK PDKSNRHMKP LYLKGHVDGK QVSRMLVDGG
     AAVNLMPYSL FKKLGREDDE LKKTNMILNG FNGEPTEAKG IFSAEFTVGN KTLPTAFFIV
     DVKEANLELL QKRVQEYRST KNDIGETIED FDEVEKLGKG FTSANPLEEV DIGDGIKPRP
     TFINKNLRAD YKVKIIELLK EYVDCFAWEY HEIPGLSREL VEHRLPIKPG FRPYKQPPRR
     FNPLLYDRVK EEIDRLLKDG FIRPRCYAEW VSSIVPVEKK GSCKIRVCKD FRDLNKATPK
     DEYPMPIADM MINGVSGHKV ISFLDGNAGY NQIFMAEEDM YKTAFRCPGF VGLLEWVVMT
     FGSKNVGATY QRAMNLIFHD LLGIILEIYI DDIVVKSNGM EGHIADLRLA FERMRRSGLK
     MNPLKCAFDK VIGAVLTQEE DGKEYIITYL SRRLLDAETR YIARHDNSRA NDLSQQASCY
     NVKKGLFLVL EESVLDFKPV TTGNNPTGVP DVRALILVPG GKNLGGGGTE PQERGGAPGG
     GDGGGRARRT RGCPTMRPAS SSPPTRAPSP APKTTTTRIT CSLMNLVVFL SDGICWDCFE
     FVDDAVDLDE AAAGDLVDLV PPHLPPHLHR LAVPAIRRVS VRHQHVVAGV RIGVGGAPPH
     HPLGALNFAM RAACGEQRAP DERVRVYWHC RDELLCLV
//