ID Q2QXH7_ORYSJ Unreviewed; 1764 AA.
AC Q2QXH7;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 11-JUL-2006, sequence version 2.
DT 27-MAR-2024, entry version 116.
DE SubName: Full=Retrotransposon protein, putative, unclassified, expressed {ECO:0000313|EMBL:ABA96496.2};
GN OrderedLocusNames=LOC_Os12g06010 {ECO:0000313|EMBL:ABA96496.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA96496.2};
RN [1] {ECO:0000313|EMBL:ABA96496.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA96496.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA96496.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; DP000011; ABA96496.2; -; Genomic_DNA.
DR OrthoDB; 356980at2759; -.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd14702; bZIP_plant_GBF1; 1.
DR CDD; cd06222; RNase_H_like; 1.
DR CDD; cd01650; RT_nLTR_like; 1.
DR Gene3D; 3.60.10.10; Endonuclease/exonuclease/phosphatase; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR045314; bZIP_plant_GBF1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR036691; Endo/exonu/phosph_ase_sf.
DR InterPro; IPR005135; Endo/exonuclease/phosphatase.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR46890; NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED; 1.
DR PANTHER; PTHR46890:SF45; RNA BINDING _ RNA-DIRECTED DNA POLYMERASE; 1.
DR Pfam; PF03372; Exo_endo_phos; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF56219; DNase I-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils}.
FT DOMAIN 604..886
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT REGION 85..104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1462..1521
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1537..1561
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1626..1653
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1660..1711
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1462..1480
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1638..1652
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1764 AA; 198103 MW; 2DAFDEA7911E3A1A CRC64;
MLRDMNDQPT RVDAFDGFDI REGKGEDSID SQLADQTNML HVSEVASLGQ KKGKDLVSKE
TSSIPSMEMI PAIRDLNVQQ VSFGDGSTEE FGSPTKRKAL PTTKSSGIVQ QAVLEYGQRG
AEETASSTRA MKRLKKGVEA NTGVEDMEAT SLGAAGKLAG PMRGQSVEKM SRLRGRLGLR
GFTGVSSEGM SGGLALYWDE SVSVDVKDIN KRYIDAYVQL SPEEPQWHVT FVYGEPRVEN
RHRMWSLLRT IHQSSSLPWA VIGDFNETMW QFEHFSRTPR GEPQMQDFRD VLQDCELHDL
GFKGVPHTYD NKREGWRNVK VRLDRVVADD KWRDIYSTAQ VVHLVSPCSD HCPILLNLVV
KDPHQLRQKC LHYEIVWERE PEATQVIEEA WVVAGEKADL GDINKALAKV MTALRSWSRA
KVKNVGRELE KARKKLAELI ESNADRTVIR NATDHMNELL YREEMLWLQR SRVNWLKDED
RNTKFFHSRA VWRAKKNKIS KLRDANETVH SSTMKLESMA TEYFQDVYTA DPNLNPETVT
RLIQEKVTDI MNEKLCEDFT EDEISQAIFQ IGPLKSPGPD GFPARFYQRN WGTIKADIIG
AVRRFFQTGL MPEGVNDTAI VLIPKKEQPV DLRDFRPISL CNVVYKVVSK CLVNRLRPIL
DDLVSVEQSA FVQGRMITDN ALLAFECFHA MQKNKKANHA ACAYKLDLSK AYDRVDWRFL
EMAMNKLGFA RRWVNWIMKC VTSVRYMVKF NGTLLQSFAP TRGLRQGDPL LPFLFLFVAD
GLSLLLKEKV AQNSLTPFKV CRAAPGISHL LFADDTLLFF KAHQREAEVV KEVLSSYAMG
TGQLINPAKC SILMGGASTP AVSEAISEIL QVERDRFEDR YLGFPTPEGR MHKGRFQSLQ
AKIWKRVIQW GENHLSTGGK EVLIKAVIQA IPVYVMGIFK LPESVIDDLT KLTKNFWWDS
MNGQRKTHWK AWDSLTKPKS LGGLGFRDYR LFNQALLARQ AWRLITYPDS LCARVLKAKY
FPHGSLIDTS FGSNSSPAWR SIEYGLDLLK KGIIWRVGNG NSIRIWRDSW LPRDHSRRPI
TGKANCRLKW VSDLITEDGS WDVPKIHQYF HNLDAEVILN ICISSRSEED FIAWHPDKNG
MFSVRSAYRL AAQLVNIEES SSSGTNNINK AWEMIWKCKV PQKVKIFAWR VASNCLATMV
NKKKRKLEQS DMCQICDREN EDDAHALCRC IQASQLWSCM HKSGSVSVDI KASVLGRFWL
FDCLEKIPEY EQAMFLMTLW RNWYVRNELI HGKSAPPTET SQRFIQSYVD LLFQIRQAPQ
ADLVKGKHVV RTVPLKGGPK YRVLNNHQPC WERPKDGWMK LNVDGSFDAS SGKGGLGMIL
RNSAGDIIFT SCKPLERCNN PLESELRACV EGLKLAIHWT LLPIQVETDC ASVVQLLQGI
GRDFSVLANI IHEARHLLQT PSRTNTKVTT QKQTLRPNAT AHCMPTDRPT EPGPRGGPGG
HPSRRFRPPS HPLTRGPHTH AAPPLAAALA CPHGEQPDAK ILPAATPPMS DDHSGGGGEQ
RQCRRGFAVD VVELGAALAL ADMAGAAVKP AMQLQLQPTA AQEEDEEMAT TRLSLQLGNN
VGSIIQSSSC SSSGSSAGLP APPPPPPPAT AYGTKPLHML TEEEKEAKRL RRVLANRESA
RQTILRRQAI RDELARKVAD LSTQNESMKK LKLAINSNDV VFGGAGEGDS DAGVPLTEGD
KQAAQRTGTA SSFAFLVLIN LLVV
//
