ID   Q2R2I5_ORYSJ            Unreviewed;      1342 AA.
AC   Q2R2I5;
DT   24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT   24-JAN-2006, sequence version 1.
DT   27-MAR-2024, entry version 62.
DE   SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABA94361.1};
GN   OrderedLocusNames=LOC_Os11g35700 {ECO:0000313|EMBL:ABA94361.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA94361.1};
RN   [1] {ECO:0000313|EMBL:ABA94361.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2] {ECO:0000313|EMBL:ABA94361.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:ABA94361.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R.;
RL   Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; DP000010; ABA94361.1; -; Genomic_DNA.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd00303; retropepsin_like; 1.
DR   CDD; cd09279; RNase_HI_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.30.70.270; -; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   PANTHER; PTHR46387:SF8; OS08G0481175 PROTEIN; 1.
DR   PANTHER; PTHR46387; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   PROSITE; PS50879; RNASE_H_1; 1.
PE   4: Predicted;
FT   DOMAIN          1142..1271
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|PROSITE:PS50879"
FT   REGION          37..67
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          79..106
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          176..197
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          276..299
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          327..400
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          825..854
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        327..361
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        364..400
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1342 AA;  150843 MW;  03C18D3D0B26CD0B CRC64;
     MTIAGSSLKC AKSMYQPIDD SRWLGVESAE GSDAARVVPY DERGGRSERS ALSSCSGHAA
     SGRRRGALAT VASSRDALYR KLPGESAPDP PPSRYSAIPV GVASSSSPTS AIGSVSGIDD
     FVFPPRQAFR FGSLDFGKIS LLDSDSNQSG RGQISAPFGI PNSAEVYPKI ISTELASNHS
     DEIQSTPTRP DQDDGSREVG VILQPLGTVS TEELDGYLSS PDVSSRPTEI LEYDDFGYRY
     DYGNFNDFDD SYEDDYTPLF FGVFMADNET AKQRQAREAE EERTRKEAER RRLKEEQQRQ
     DLLKEDALNQ HVIKILNQTK TMIAASVPAN SASTRTPTGS RVPPLRSQDY HQPSLSIADA
     GSSRRSRGHG ERSVHSPPER HRERRVERPR SPHRRRPVDL CDTINQRRAA RGYAPHHSPD
     RYDDDVDGVA AFTSDLRRVD WPAGFKPTGI EKYDGSTNPE SWLTVYDLAI RTVGGNSKAM
     VPRGTIGSWA ELREHFITNF QGTFERLGTQ FELYNVIKKP GESLRDYIRR FSEQRNKISD
     ITDDVIIAAF TKGICHEDLV GKFGRKPPRM VKQIFEKANE YAKAEDAITA SKQSGTTWKP
     KKDTPTTGGV EVPITRIASR KQKLTEREIN AVQPDMPQYL WWSETTIKFD RSDHPDRVVH
     PGRYPLVLDP MVRNVKLRRS LIDGGSALNI LFAKTLDDMQ IPRTELKPSN TPFHRVIPRL
     SATPLGQITL PVTFGTRENF RIENVCFEVA DFETPYHAIL GRPALAKFMA VPHYTYMMMK
     MPGPRGVISL RSDIKQAVTC DKESCEMAQT HEITLAREEV RLATSTASEG EVPATKMPKS
     GESDAKTKKI PLDPSDPTKT AVIDIFTWKP SDMPGIPREV IEHSLHVKED AKPSKQRLCR
     FAQDRKDAIK EELTKLLAAG FIKEVLHLDW LANPVLVRKK TGQWRMCVDY IDLNKSCPKD
     PFGLPRIDQI GRNVEAYVDD VVVKTKQKDD LITDLKEIFA SILTFRMKLN PEKCIFGVPS
     GKLLGFMVSH RGIQANPEKV NAILNMKPPS SQKDVQKQTG CMAALSRKLS HYFQGHSVTV
     VISFPLGDIL HNHEANGRIA KWALELMSLD ISFKPRTSIK SQALADFVAE WTECQEDMPE
     EKMEYWTMHF DGSKRLSGTG AGVVLLSPTG ERLSYVLRIH FSASHNVAEY EALLHGLRIA
     ISLGIRRLIV RGDSQLVVNQ VMKEWSCLDD NMTAYRQEVR KLEDKFDGFE LTHVLRHNNE
     AADRLANFCS KREAAPSDVF VEHLYEPTVP RKETIEATDT QDVSMIEADW REPLIRFLTK
     LELPQDKDEA ERISRRSKLC YS
//