ID Q2R3G9_ORYSJ Unreviewed; 1212 AA.
AC Q2R3G9;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 24-JAN-2006, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE SubName: Full=Retrotransposon protein, putative, Ty1-copia subclass {ECO:0000313|EMBL:ABA93966.1};
GN OrderedLocusNames=LOC_Os11g31970 {ECO:0000313|EMBL:ABA93966.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA93966.1};
RN [1] {ECO:0000313|EMBL:ABA93966.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA93966.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA93966.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000010; ABA93966.1; -; Genomic_DNA.
DR AlphaFoldDB; Q2R3G9; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR025724; GAG-pre-integrase_dom.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648:SF22; RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF13976; gag_pre-integrs; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF07727; RVT_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 242..257
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 518..614
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 188..239
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 693..734
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 197..239
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 693..712
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 713..734
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1212 AA; 136429 MW; 19DEF13A5B7F18E6 CRC64;
MAGFADALRP DKFTGMLFKR WQIRVTLWLT AMKCFWVSTS KPMGVLNADQ QKEFDEATTL
FVGCILSVLG DRLVEVYMHM TDTKELWDAL NTEFGATDAS NDMYIMEQFH DYKMADNRSV
VEQAHEIQTM AKELELLKCV LLDKFVAGCI IAKLPPSWRG FGTALKHKRQ EYSVEGLIAS
LDVEEKAREK DAASKGDGGQ SNANVVHKAQ NKSKGKYKAQ QTTNFKKQKK NNNNPNQDER
TCFVCGQPGH LARKCPQRKG MKAPARQTYK SANVTIDNIG DGSGYDNLPT VFSVNQSTNW
WVDTRANVAR GSTVLMGNGS HASVHGVGTV DLKFTSGKIV QLKNVQHVPS IDRNLVSGSR
LTRDGFKLVF ESNKVVISKH GYFIGKGYEC GGLFRFSLSD FCNKSVNHIC GSVDDEANVW
HSRLCHINFG LMSRLSSMCL IPKFSIVKGS KCHSCVQSKQ PRKPHKAAEE RNLAPLELLH
SDLCEMNGVL TKKTKDEALD YFKIYKAEVE NQLDRKIKRL RSDHGGEFLS NEFDLFCEEH
SIIHERTPPY SPETNGIAER KNRILTDLVN AMLDTAGLPK AWWGEALLTS NHVLNRVPNR
NKDKTPYEIW IGRKPSLSYL RTWGCLVKVN VPITKKRKLG PKTVDCVFLG YAHHSITYRF
LIVKSEVPDM HVGTIMKSRD ATLFESFFPM KDTHSGSSQP SEIIPSSITP PEQTEHTHEH
VSEEDVSEAP RRSKRQMTAK SFGDDFTVYL VDDTPKSISE AYASPDADYW KEAVRSEMDS
IIANGTWEVT ERPYGCKPVG CKWVFKKKLR PDGTIEKYKA RLVAKGYTQK ECEDFFDTYS
PVARLTTIRV LLSLPASHGL LVHQMDVKTA FLNGELDEEI YMDQPDGFVV EGQEGKVCKL
LKSLYGLKQA PKQWHEKFDK TLTSAGFAVN EADKCVYYRH GGGEGVILCL YVDDILIFGT
NLEVINEVKS FLSQNFDMKD LGVADVILNI KLIKGENGIT LLQSHYVEKI LNRFGYIDSK
PSPTPYDPSL LLRKNKRIAK NQLEYFQIIG SLMYLASATR PDISFAVSKL SRFTSNPGDD
HWRALERVMR YLKGTMELGL HYTGYPAISD VDEIKATSGY VFTLGGGAVS WRSCKQTILT
RSTMEAELTA LDTTTVEAES LRDLLIDLPI VEKSVPAILI NCDNQTTYEK TIEVCQEIEK
LRSYNVGLHP NS
//
