ID   Q2R3R9_ORYSJ            Unreviewed;      1361 AA.
AC   Q2R3R9;
DT   24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT   24-JAN-2006, sequence version 1.
DT   27-MAR-2024, entry version 71.
DE   SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass, expressed {ECO:0000313|EMBL:ABA93911.1};
GN   OrderedLocusNames=LOC_Os11g30990 {ECO:0000313|EMBL:ABA93911.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA93911.1};
RN   [1] {ECO:0000313|EMBL:ABA93911.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2] {ECO:0000313|EMBL:ABA93911.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:ABA93911.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R.;
RL   Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; DP000010; ABA93911.1; -; Genomic_DNA.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd09279; RNase_HI_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.30.70.270; -; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041373; RT_RNaseH.
DR   PANTHER; PTHR24559:SF437; RIBONUCLEASE H; 1.
DR   PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   Pfam; PF17917; RT_RNaseH; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50879; RNASE_H_1; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT   DOMAIN          1170..1292
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|PROSITE:PS50879"
FT   REGION          1..39
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          540..565
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          591..648
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          742..761
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          92..129
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        540..559
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1361 AA;  150162 MW;  A15B983B16F23C37 CRC64;
     MAAEEGAEPS APVAEAGGAQ APSQPPSAPA TSVQVPNEAD VAKAAAAARA LQTRAEILST
     SQPVVPQVAP SQPAVTTTAL AVVQAQTSLD PEAQAEADME AMRQNMTRLQ DMLRQMQEQQ
     QAYEAARRVK VTSAPILQYL ACYVPPQVHP QVTTQPFPPQ AAQTPVYFAG QHQPLGQVPQ
     TVVEGASALQ AQLQAFLQQL NQPHYISSTT PSAHPVGNRS QGASTWLPPI QSGSGASPWN
     QGPQFDCANV AQAPTIRQQA PTPGFGTNQA PIQAAMIWSQ PIFDPSMAAQ QVPPVGAGQP
     NAMAQPHAQA AISPFATPYP QQGAVNRAGG EKGLPLSGGI KIRPIPPQFK FPPVPRYSGE
     TDPKEFLSIY ESAIEASHGD KNTKAKVIHL ALDGIACSWY FNLPANSIYS WEQLRDVFVF
     NFRGTYEEPK TQQHLLGIRQ RPGESIREYM RRFSQARCQV QDITEASVIN AASASLLEGE
     LTRKIANKEP QTLEHLLRII DGFARGEEDS RRRQAIQAEY DKASVAAAQA QAQVQIAEPP
     PLSVRQSQPA IQGQPPRQGQ APMTWRKFRT DRAGKAVMAV EEVQALRKEF DAQQASNHQQ
     PARKKQCRNI RQRGNAQDPR PQQGATVEAP REAVQEQTPP AEQRQDTQRR VIQVITRADP
     PSQLSKRQRK MQIRMVHSIP YNYNAIFGRA TLNKFEAISH HNYLKLKMPG PKGVIVVKGL
     QPSAASKRDL AIINRAVHNV ETEPHERPKH TPKPTPHGKV TKVQIDDADP TKLISQGDDM
     GEEEVESILE VLKKNIDIFA WSPDVVGGVP ADLIMHHLAV KPDIKPRKQK LRKMSADRQE
     AAKAEVQKLL RTGVIQEIDH PEWLANLVLV RKSNSKWRMC VDFTDLNKAC PKDDFPLSRI
     DQLVDSTAGC EFMSFLDAYS GYHQIHMNPL DIPKTSFITL FGTFCHLRMP FGLRNALATF
     ARLVYKVLGK QLGRNVEAYV DDFVETFDSL CAAGIKLNPK KCVFGVRAGK LLGFLVSERG
     IELNPEKIDA IQQMKPPSSV HEVQKLAGRI AALSRFLSKA AERASPVAVS AVLVQETESG
     QKPVYFVSKA LQGAKTRYIE MEKLAYALVM ASRKLKHYFQ AHKVIVPSQY PLGEILRGKE
     DTGRLSNWAA ELSPFDLHFV ARSAIKSQVL ADFVAEWTPV LAPDPEPDDQ FWVMCSDARL
     QFDTTNNAAE YEAVLLGLRK AKALGVRRLL IRTDSKLVVG HVDKSFEAKE EGMKRYLEAG
     RSMKKCVTGI TVEHLPRDQN EEADTLAKSA SCGGPHSPGI FFEVLHAPSV PMDSSEVMTI
     DQKKLGEDPY DWRTPFVKHL ETGWLPVDEA EAKRLQLSHE V
//