ID Q4H2G3_CIOIN Unreviewed; 522 AA.
AC Q4H2G3; A0A1W3JUE1;
DT 30-AUG-2005, integrated into UniProtKB/TrEMBL.
DT 30-AUG-2005, sequence version 1.
DT 24-JAN-2024, entry version 76.
DE SubName: Full=Zinc finger protein {ECO:0000313|EMBL:BAE06814.1};
DE Flags: Fragment;
GN Name=Ci-ZF(PHD/NFX/ DDT) {ECO:0000313|EMBL:BAE06814.1};
OS Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis).
OC Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
OC Cionidae; Ciona.
OX NCBI_TaxID=7719 {ECO:0000313|EMBL:BAE06814.1};
RN [1] {ECO:0000313|EMBL:BAE06814.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12736827; DOI=10.1007/s00427-003-0330-z;
RA Satou Y., Satoh N.;
RT "Genomewide surveys of developmentally relevant genes in Ciona
RT intestinalis.";
RL Dev. Genes Evol. 213:211-212(2003).
RN [2] {ECO:0000313|EMBL:BAE06814.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=15269171; DOI=10.1242/dev.01270;
RA Imai K.S., Hino K., Yagi K., Satoh N., Satou Y.;
RT "Gene expression profiles of transcription factors and signaling molecules
RT in the ascidian embryo: towards a comprehensive understanding of gene
RT networks.";
RL Development 131:4047-4058(2004).
RN [3] {ECO:0000313|EMBL:BAE06814.1}
RP NUCLEOTIDE SEQUENCE.
RA Satou Y.;
RT "Expressed genes in Ciona intestinalis.";
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AB210809; BAE06814.1; -; mRNA.
DR RefSeq; XP_009861456.1; XM_009863154.1.
DR AlphaFoldDB; Q4H2G3; -.
DR GeneID; 778829; -.
DR KEGG; cin:778829; -.
DR OrthoDB; 2878869at2759; -.
DR GO; GO:0016589; C:NURF complex; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd15559; PHD1_BPTF; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR038028; BPTF.
DR InterPro; IPR018501; DDT_dom.
DR InterPro; IPR028941; WHIM2_dom.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR45975; NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF; 1.
DR PANTHER; PTHR45975:SF2; NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF; 1.
DR Pfam; PF02791; DDT; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF15613; WSD; 1.
DR SMART; SM00571; DDT; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS50827; DDT; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 2: Evidence at transcript level;
KW Bromodomain {ECO:0000256|ARBA:ARBA00023117};
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 190..250
FT /note="DDT"
FT /evidence="ECO:0000259|PROSITE:PS50827"
FT DOMAIN 340..387
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 117..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 30..63
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 81..96
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 118..133
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 522
FT /evidence="ECO:0000313|EMBL:BAE06814.1"
SQ SEQUENCE 522 AA; 59311 MW; 7B3A9421FCCF8E82 CRC64;
MPKRGEDGTP SPSEGGEGRL RLELRKLTNS AGWISATRES STPSSRASTP HSNSSNTQSS
IHPRKRGRPP GSLNKKKPNK NDKSSTRKKR TKKDKPKKFK MVLEKDDDYE VDYLSSEESD
VDSLSSATPR KPPSIGSLSG DDGYLDKEDL SSVEGCLSPW RLTEEEVDLP MEDVPKLDLP
PSSIDLLIPN NLLMSALAVY EILKHFRNPL RLSPMLFEDF CAALVCRETT VLLNECHITL
IKALLKEDEA SGTVFVPSDQ KDAHNAALYF IDYLTWPEVV RAYVESYGEF PDVIKVLVEP
EYPRVDADKK LKVLQLLTDL YMGSTKIRDE LMMNGAIQYD DHCRVCHQLG DLLCCETCPA
VYHLACCNPP LQEVPDDEWQ CEVCVAHKLN GVVNCEQDME VNGQYLRHEP VGVDRNGRKY
WFLARRLIVE GEYEVIYYST KEQFDYLRSK LDGEKHEAIL CEALNDIAGE FRYQSKITDD
LTEEVKWGGG GRTCLELMKD NVRQMIEEDK KREAEEKKKK EE
//
